Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotides ABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotides
ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895
_RS01055
ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945
_RS01060
ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662
_RS01065
Position (kb) 212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 211.053 kb on + strand, within ABZR87_RS01055 at 211.054 kb on - strand, within ABZR87_RS01055 at 211.115 kb on + strand, within ABZR87_RS01055 at 211.116 kb on - strand, within ABZR87_RS01055 at 211.118 kb on - strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.325 kb on + strand, within ABZR87_RS01055 at 211.325 kb on + strand, within ABZR87_RS01055 at 211.355 kb on - strand, within ABZR87_RS01055 at 211.355 kb on - strand, within ABZR87_RS01055 at 211.355 kb on - strand, within ABZR87_RS01055 at 211.670 kb on + strand, within ABZR87_RS01055 at 211.804 kb on + strand at 211.804 kb on + strand at 211.805 kb on - strand at 211.848 kb on - strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.850 kb on - strand at 211.850 kb on - strand at 211.850 kb on - strand at 211.850 kb on - strand at 211.851 kb on - strand at 211.984 kb on + strand at 211.985 kb on - strand at 211.985 kb on - strand at 211.987 kb on - strand at 211.988 kb on + strand at 211.991 kb on - strand at 211.997 kb on + strand at 211.997 kb on + strand at 211.997 kb on + strand at 211.997 kb on + strand at 212.943 kb on + strand at 212.944 kb on - strand at 212.944 kb on - strand at 213.027 kb on + strand at 213.028 kb on - strand at 213.028 kb on - strand at 213.032 kb on + strand at 213.188 kb on + strand, within ABZR87_RS01065 at 213.581 kb on + strand, within ABZR87_RS01065 at 213.582 kb on - strand, within ABZR87_RS01065 at 213.582 kb on - strand, within ABZR87_RS01065 at 213.582 kb on - strand, within ABZR87_RS01065 at 213.702 kb on + strand, within ABZR87_RS01065 at 213.702 kb on + strand, within ABZR87_RS01065 at 213.703 kb on - strand, within ABZR87_RS01065 at 213.703 kb on - strand, within ABZR87_RS01065 at 213.703 kb on - strand, within ABZR87_RS01065 at 213.808 kb on + strand, within ABZR87_RS01065 at 213.809 kb on - strand, within ABZR87_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 211,053 + ABZR87_RS01055 0.20 -0.8 211,054 - ABZR87_RS01055 0.20 +0.2 211,115 + ABZR87_RS01055 0.26 +0.5 211,116 - ABZR87_RS01055 0.26 -0.1 211,118 - ABZR87_RS01055 0.27 -0.3 211,321 + ABZR87_RS01055 0.46 -1.3 211,321 + ABZR87_RS01055 0.46 +0.1 211,321 + ABZR87_RS01055 0.46 -0.1 211,321 + ABZR87_RS01055 0.46 -0.2 211,322 - ABZR87_RS01055 0.46 +1.0 211,322 - ABZR87_RS01055 0.46 +0.4 211,322 - ABZR87_RS01055 0.46 +1.2 211,322 - ABZR87_RS01055 0.46 +0.6 211,322 - ABZR87_RS01055 0.46 -1.3 211,322 - ABZR87_RS01055 0.46 -0.2 211,322 - ABZR87_RS01055 0.46 -1.5 211,322 - ABZR87_RS01055 0.46 -1.2 211,322 - ABZR87_RS01055 0.46 +0.0 211,322 - ABZR87_RS01055 0.46 +0.3 211,322 - ABZR87_RS01055 0.46 -0.8 211,322 - ABZR87_RS01055 0.46 -0.6 211,325 + ABZR87_RS01055 0.46 -1.1 211,325 + ABZR87_RS01055 0.46 -0.0 211,355 - ABZR87_RS01055 0.49 -2.2 211,355 - ABZR87_RS01055 0.49 +0.4 211,355 - ABZR87_RS01055 0.49 +0.3 211,670 + ABZR87_RS01055 0.79 +1.1 211,804 + +0.1 211,804 + -1.7 211,805 - -2.5 211,848 - +0.3 211,849 + +1.0 211,849 + -0.0 211,849 + +0.0 211,849 + -0.6 211,849 + +0.6 211,850 - -0.1 211,850 - +0.3 211,850 - -1.7 211,850 - -0.2 211,851 - -0.6 211,984 + -0.2 211,985 - +0.7 211,985 - -0.0 211,987 - -0.5 211,988 + +2.1 211,991 - +2.0 211,997 + +0.5 211,997 + +0.7 211,997 + +0.2 211,997 + +0.2 212,943 + +3.2 212,944 - -0.4 212,944 - +1.2 213,027 + -0.9 213,028 - +0.0 213,028 - +0.2 213,032 + +0.4 213,188 + ABZR87_RS01065 0.14 -1.8 213,581 + ABZR87_RS01065 0.37 +1.3 213,582 - ABZR87_RS01065 0.37 -0.4 213,582 - ABZR87_RS01065 0.37 -1.4 213,582 - ABZR87_RS01065 0.37 -1.0 213,702 + ABZR87_RS01065 0.44 +1.9 213,702 + ABZR87_RS01065 0.44 +1.4 213,703 - ABZR87_RS01065 0.44 -0.6 213,703 - ABZR87_RS01065 0.44 +1.1 213,703 - ABZR87_RS01065 0.44 -0.5 213,808 + ABZR87_RS01065 0.50 +0.8 213,809 - ABZR87_RS01065 0.50 +1.3
Or see this region's nucleotide sequence