Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3755

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3753 and Rru_A3754 are separated by 223 nucleotidesRru_A3754 and Rru_A3755 are separated by 141 nucleotidesRru_A3755 and Rru_A3756 are separated by 210 nucleotides Rru_A3753: Rru_A3753 - hypothetical protein (NCBI), at 4,301,226 to 4,305,737 _A3753 Rru_A3754: Rru_A3754 - hypothetical protein (NCBI), at 4,305,961 to 4,306,215 _A3754 Rru_A3755: Rru_A3755 - Heat shock protein Hsp20 (NCBI), at 4,306,357 to 4,306,905 _A3755 Rru_A3756: Rru_A3756 - PAS/PAC Sensor Hybrid Histidine Kinase (NCBI), at 4,307,116 to 4,309,134 _A3756 Position (kb) 4306 4307Strain fitness (log2 ratio) -2 -1 0 1at 4305.433 kb on - strandat 4305.512 kb on + strandat 4305.512 kb on + strandat 4305.513 kb on - strandat 4305.513 kb on - strandat 4305.513 kb on - strandat 4305.516 kb on + strandat 4305.517 kb on - strandat 4305.517 kb on - strandat 4305.517 kb on - strandat 4305.517 kb on - strandat 4305.517 kb on - strandat 4305.517 kb on - strandat 4305.529 kb on + strandat 4305.529 kb on + strandat 4305.529 kb on + strandat 4305.530 kb on - strandat 4305.530 kb on - strandat 4305.530 kb on - strandat 4305.533 kb on + strandat 4305.534 kb on - strandat 4305.534 kb on - strandat 4305.534 kb on - strandat 4305.534 kb on - strandat 4305.614 kb on - strandat 4305.680 kb on + strandat 4305.681 kb on - strandat 4305.773 kb on - strandat 4305.845 kb on + strandat 4305.845 kb on + strandat 4305.879 kb on + strandat 4305.886 kb on + strandat 4305.984 kb on + strandat 4305.984 kb on + strandat 4305.984 kb on + strandat 4305.985 kb on - strandat 4306.115 kb on + strand, within Rru_A3754at 4306.115 kb on + strand, within Rru_A3754at 4306.116 kb on - strand, within Rru_A3754at 4306.116 kb on - strand, within Rru_A3754at 4306.116 kb on - strand, within Rru_A3754at 4306.116 kb on - strand, within Rru_A3754at 4306.285 kb on + strandat 4306.285 kb on + strandat 4306.285 kb on + strandat 4306.285 kb on + strandat 4306.437 kb on + strand, within Rru_A3755at 4306.472 kb on - strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.722 kb on + strand, within Rru_A3755at 4306.723 kb on - strand, within Rru_A3755at 4306.723 kb on - strand, within Rru_A3755at 4306.723 kb on - strand, within Rru_A3755at 4306.723 kb on - strand, within Rru_A3755at 4306.724 kb on + strand, within Rru_A3755at 4306.724 kb on + strand, within Rru_A3755at 4306.724 kb on + strand, within Rru_A3755at 4306.724 kb on + strand, within Rru_A3755at 4306.725 kb on - strand, within Rru_A3755at 4306.734 kb on - strand, within Rru_A3755at 4306.792 kb on + strand, within Rru_A3755at 4306.792 kb on + strand, within Rru_A3755at 4306.793 kb on - strand, within Rru_A3755at 4306.941 kb on + strandat 4306.941 kb on + strandat 4306.941 kb on + strandat 4306.941 kb on + strandat 4306.942 kb on - strandat 4306.942 kb on - strandat 4306.944 kb on + strandat 4306.944 kb on + strandat 4306.945 kb on - strandat 4306.975 kb on + strandat 4306.975 kb on + strandat 4306.976 kb on - strandat 4307.078 kb on + strandat 4307.172 kb on + strandat 4307.173 kb on - strandat 4307.173 kb on - strandat 4307.602 kb on - strand, within Rru_A3756at 4307.704 kb on - strand, within Rru_A3756at 4307.721 kb on + strand, within Rru_A3756at 4307.721 kb on + strand, within Rru_A3756at 4307.721 kb on + strand, within Rru_A3756at 4307.722 kb on - strand, within Rru_A3756at 4307.722 kb on - strand, within Rru_A3756at 4307.722 kb on - strand, within Rru_A3756at 4307.722 kb on - strand, within Rru_A3756at 4307.854 kb on + strand, within Rru_A3756at 4307.854 kb on + strand, within Rru_A3756at 4307.854 kb on + strand, within Rru_A3756at 4307.854 kb on + strand, within Rru_A3756at 4307.854 kb on + strand, within Rru_A3756

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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4,305,433 - -0.4
4,305,512 + -0.3
4,305,512 + -0.7
4,305,513 - -0.0
4,305,513 - -1.0
4,305,513 - -1.8
4,305,516 + -1.5
4,305,517 - -1.2
4,305,517 - -0.0
4,305,517 - -1.5
4,305,517 - -0.3
4,305,517 - -2.2
4,305,517 - -0.0
4,305,529 + -0.0
4,305,529 + -1.2
4,305,529 + -0.0
4,305,530 - -0.0
4,305,530 - -0.0
4,305,530 - -2.6
4,305,533 + -0.0
4,305,534 - -1.2
4,305,534 - -0.0
4,305,534 - -1.1
4,305,534 - -0.9
4,305,614 - -0.0
4,305,680 + -0.0
4,305,681 - -1.1
4,305,773 - -0.6
4,305,845 + -2.5
4,305,845 + -0.0
4,305,879 + -0.0
4,305,886 + -1.0
4,305,984 + -0.0
4,305,984 + -0.0
4,305,984 + -1.0
4,305,985 - -0.0
4,306,115 + Rru_A3754 0.60 -1.0
4,306,115 + Rru_A3754 0.60 +1.0
4,306,116 - Rru_A3754 0.61 -0.6
4,306,116 - Rru_A3754 0.61 -0.0
4,306,116 - Rru_A3754 0.61 -0.0
4,306,116 - Rru_A3754 0.61 -1.0
4,306,285 + -0.0
4,306,285 + -0.0
4,306,285 + -1.3
4,306,285 + -1.0
4,306,437 + Rru_A3755 0.15 -0.0
4,306,472 - Rru_A3755 0.21 -0.0
4,306,722 + Rru_A3755 0.66 -2.0
4,306,722 + Rru_A3755 0.66 -0.3
4,306,722 + Rru_A3755 0.66 -1.3
4,306,722 + Rru_A3755 0.66 -0.0
4,306,722 + Rru_A3755 0.66 -0.0
4,306,722 + Rru_A3755 0.66 -0.0
4,306,722 + Rru_A3755 0.66 -1.8
4,306,722 + Rru_A3755 0.66 -0.9
4,306,722 + Rru_A3755 0.66 -0.0
4,306,723 - Rru_A3755 0.67 -1.7
4,306,723 - Rru_A3755 0.67 -0.0
4,306,723 - Rru_A3755 0.67 -0.0
4,306,723 - Rru_A3755 0.67 -1.5
4,306,724 + Rru_A3755 0.67 -0.0
4,306,724 + Rru_A3755 0.67 -1.2
4,306,724 + Rru_A3755 0.67 -0.0
4,306,724 + Rru_A3755 0.67 -0.9
4,306,725 - Rru_A3755 0.67 -0.0
4,306,734 - Rru_A3755 0.69 -1.3
4,306,792 + Rru_A3755 0.79 -0.0
4,306,792 + Rru_A3755 0.79 -1.9
4,306,793 - Rru_A3755 0.79 -0.0
4,306,941 + -0.0
4,306,941 + -0.0
4,306,941 + -0.0
4,306,941 + -1.0
4,306,942 - -0.9
4,306,942 - -1.3
4,306,944 + -1.0
4,306,944 + -1.4
4,306,945 - -0.0
4,306,975 + -0.0
4,306,975 + -1.2
4,306,976 - -1.6
4,307,078 + -0.0
4,307,172 + -1.9
4,307,173 - -0.2
4,307,173 - -0.8
4,307,602 - Rru_A3756 0.24 -1.4
4,307,704 - Rru_A3756 0.29 -0.9
4,307,721 + Rru_A3756 0.30 -0.0
4,307,721 + Rru_A3756 0.30 -0.9
4,307,721 + Rru_A3756 0.30 -0.0
4,307,722 - Rru_A3756 0.30 -0.0
4,307,722 - Rru_A3756 0.30 -0.0
4,307,722 - Rru_A3756 0.30 -0.0
4,307,722 - Rru_A3756 0.30 -0.0
4,307,854 + Rru_A3756 0.37 -0.0
4,307,854 + Rru_A3756 0.37 -0.0
4,307,854 + Rru_A3756 0.37 -0.7
4,307,854 + Rru_A3756 0.37 -0.6
4,307,854 + Rru_A3756 0.37 +1.0

Or see this region's nucleotide sequence