Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3753

Experiment: acetate; Light intensity 75 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 75 uM
4,300,272	+		Rru_A3751	0.79	-1.0
4,300,272	+		Rru_A3751	0.79	-2.5
4,300,273	-		Rru_A3751	0.79	-0.0
4,300,368	+		Rru_A3751	0.87	-0.0
4,300,368	+		Rru_A3751	0.87	-4.4
4,300,369	-		Rru_A3751	0.87	-3.5
4,300,428	+				-0.0
4,300,428	+				-0.0
4,300,428	+				-0.0
4,300,428	+				-0.0
4,300,428	+				-0.5
4,300,429	-				-1.0
4,300,429	-				-3.8
4,300,429	-				-2.9
4,300,429	-				-3.7
4,300,429	-				-2.9
4,300,429	-				-2.3
4,300,429	-				-0.0
4,300,456	-				-3.0
4,300,559	+				+0.7
4,300,559	+				+0.2
4,300,559	+				-0.0
4,300,560	-				-0.0
4,300,626	-				-0.0
4,300,626	-				-0.0
4,300,630	+				-0.3
4,300,638	-				+0.1
4,300,675	-				-0.0
4,300,693	-				-1.0
4,300,693	-				-0.0
4,300,910	+		Rru_A3752	0.56	-1.5
4,301,018	+		Rru_A3752	0.81	-0.0
4,301,018	+		Rru_A3752	0.81	+0.4
4,301,019	-		Rru_A3752	0.81	-0.0
4,301,128	+				-0.0
4,301,128	+				-0.0
4,301,129	-				-0.3
4,301,129	-				-1.2
4,301,153	-				-0.7
4,301,153	-				-0.4
4,301,308	+				-1.0
4,301,314	+				-0.1
4,301,315	-				-0.0
4,301,315	-				-0.4
4,301,351	-				+1.0
4,301,351	-				-0.0
4,301,401	+				+0.3
4,301,401	+				-0.0
4,301,402	-				-0.7
4,301,402	-				-0.3
4,301,454	+				-0.0
4,301,643	-				+0.4
4,301,643	-				-1.2
4,301,674	+				-1.1
4,301,674	+				-0.0
4,301,674	+				-0.0
4,301,675	-				-0.2
4,301,675	-				-0.0
4,301,675	-				-1.9
4,301,675	-				-0.3
4,301,774	-		Rru_A3753	0.12	-0.0
4,301,785	+		Rru_A3753	0.12	-0.0
4,301,785	+		Rru_A3753	0.12	-1.2
4,301,785	+		Rru_A3753	0.12	-0.6
4,301,785	+		Rru_A3753	0.12	-0.6
4,301,786	-		Rru_A3753	0.12	-0.0
4,301,801	-		Rru_A3753	0.13	-1.1
4,301,915	+		Rru_A3753	0.15	-0.5
4,301,915	+		Rru_A3753	0.15	-2.2
4,302,014	+		Rru_A3753	0.17	-0.8
4,302,177	+		Rru_A3753	0.21	-0.9
4,302,177	+		Rru_A3753	0.21	-1.1
4,302,178	-		Rru_A3753	0.21	-0.1
4,302,212	-		Rru_A3753	0.22	-0.0
4,302,261	-		Rru_A3753	0.23	-0.4
4,302,280	-		Rru_A3753	0.23	-0.9
4,302,287	-		Rru_A3753	0.24	-0.8
4,302,293	+		Rru_A3753	0.24	-0.0
4,302,293	+		Rru_A3753	0.24	-0.0
4,302,293	+		Rru_A3753	0.24	-0.3
4,302,294	-		Rru_A3753	0.24	-0.8
4,302,305	-		Rru_A3753	0.24	-1.2
4,302,447	-		Rru_A3753	0.27	-0.0
4,302,517	+		Rru_A3753	0.29	-1.0
4,302,518	-		Rru_A3753	0.29	+0.1
4,302,542	+		Rru_A3753	0.29	-0.5
4,302,542	+		Rru_A3753	0.29	-1.4
4,302,543	-		Rru_A3753	0.29	-1.0
4,302,543	-		Rru_A3753	0.29	-1.1
4,302,543	-		Rru_A3753	0.29	-0.6
4,302,617	+		Rru_A3753	0.31	-0.7
4,302,617	+		Rru_A3753	0.31	-1.3
4,302,736	-		Rru_A3753	0.33	-1.0
4,302,736	-		Rru_A3753	0.33	-0.0
4,302,784	+		Rru_A3753	0.35	-0.9
4,302,784	+		Rru_A3753	0.35	-0.7
4,302,785	-		Rru_A3753	0.35	-1.3
4,302,836	-		Rru_A3753	0.36	-0.0
4,302,853	+		Rru_A3753	0.36	-0.2
4,302,854	-		Rru_A3753	0.36	-0.8
4,302,854	-		Rru_A3753	0.36	-0.6
4,302,854	-		Rru_A3753	0.36	-0.0
4,302,854	-		Rru_A3753	0.36	-0.9
4,302,854	-		Rru_A3753	0.36	-0.8
4,302,866	-		Rru_A3753	0.36	-0.0
4,302,891	-		Rru_A3753	0.37	-0.0
4,302,891	-		Rru_A3753	0.37	-0.0
4,302,891	-		Rru_A3753	0.37	-0.6
4,302,976	+		Rru_A3753	0.39	+0.3
4,302,976	+		Rru_A3753	0.39	-0.4
4,302,976	+		Rru_A3753	0.39	-0.9
4,303,013	+		Rru_A3753	0.40	-1.2
4,303,013	+		Rru_A3753	0.40	-1.0
4,303,014	-		Rru_A3753	0.40	-0.0
4,303,014	-		Rru_A3753	0.40	-2.0
4,303,014	-		Rru_A3753	0.40	-1.0
4,303,051	+		Rru_A3753	0.40	-0.5
4,303,051	+		Rru_A3753	0.40	-1.0
4,303,052	-		Rru_A3753	0.40	-0.6
4,303,052	-		Rru_A3753	0.40	-0.0
4,303,053	+		Rru_A3753	0.40	-0.5
4,303,145	-		Rru_A3753	0.43	-0.0
4,303,242	+		Rru_A3753	0.45	-0.8
4,303,242	+		Rru_A3753	0.45	-0.9
4,303,243	-		Rru_A3753	0.45	-1.0
4,303,243	-		Rru_A3753	0.45	-0.0
4,303,275	+		Rru_A3753	0.45	-0.2
4,303,275	+		Rru_A3753	0.45	-0.7
4,303,275	+		Rru_A3753	0.45	-1.0
4,303,276	-		Rru_A3753	0.45	-0.4
4,303,356	-		Rru_A3753	0.47	-0.0
4,303,356	-		Rru_A3753	0.47	-0.5
4,303,384	-		Rru_A3753	0.48	-0.6
4,303,454	-		Rru_A3753	0.49	+1.0
4,303,615	+		Rru_A3753	0.53	-1.6
4,303,615	+		Rru_A3753	0.53	-0.0
4,303,615	+		Rru_A3753	0.53	-1.5
4,303,615	+		Rru_A3753	0.53	-0.0
4,303,615	+		Rru_A3753	0.53	-0.0
4,303,616	-		Rru_A3753	0.53	-0.2
4,303,616	-		Rru_A3753	0.53	-0.6
4,303,616	-		Rru_A3753	0.53	-0.4
4,303,692	+		Rru_A3753	0.55	-1.0
4,303,692	+		Rru_A3753	0.55	-0.0
4,303,692	+		Rru_A3753	0.55	-0.3
4,303,693	-		Rru_A3753	0.55	-1.3
4,303,729	+		Rru_A3753	0.55	-1.2
4,303,782	+		Rru_A3753	0.57	-0.2
4,303,782	+		Rru_A3753	0.57	+0.4
4,303,782	+		Rru_A3753	0.57	-1.8
4,303,782	+		Rru_A3753	0.57	-1.0
4,303,783	-		Rru_A3753	0.57	+0.4
4,303,783	-		Rru_A3753	0.57	-0.0
4,303,783	-		Rru_A3753	0.57	-0.7
4,303,783	-		Rru_A3753	0.57	-1.7
4,303,785	-		Rru_A3753	0.57	-0.8
4,303,794	+		Rru_A3753	0.57	-1.2
4,303,794	+		Rru_A3753	0.57	-1.0
4,303,795	-		Rru_A3753	0.57	-1.4
4,303,795	-		Rru_A3753	0.57	-0.0
4,303,795	-		Rru_A3753	0.57	-0.8
4,303,795	-		Rru_A3753	0.57	-0.3
4,303,795	-		Rru_A3753	0.57	-0.0
4,303,795	-		Rru_A3753	0.57	-0.8
4,303,965	+		Rru_A3753	0.61	-0.3
4,303,965	+		Rru_A3753	0.61	-0.0
4,303,965	+		Rru_A3753	0.61	-0.1
4,303,966	-		Rru_A3753	0.61	-0.0
4,303,966	-		Rru_A3753	0.61	-1.0
4,303,966	-		Rru_A3753	0.61	-1.7
4,303,966	-		Rru_A3753	0.61	-0.6
4,303,992	+		Rru_A3753	0.61	-1.2
4,303,992	+		Rru_A3753	0.61	-0.0
4,304,102	-		Rru_A3753	0.64	-0.5
4,304,102	-		Rru_A3753	0.64	-0.4
4,304,102	-		Rru_A3753	0.64	-1.8
4,304,102	-		Rru_A3753	0.64	-0.0
4,304,102	-		Rru_A3753	0.64	-1.4
4,304,102	-		Rru_A3753	0.64	-1.2
4,304,261	-		Rru_A3753	0.67	-0.9
4,304,276	+		Rru_A3753	0.68	-1.7
4,304,276	+		Rru_A3753	0.68	-0.0
4,304,276	+		Rru_A3753	0.68	-0.5
4,304,277	-		Rru_A3753	0.68	-0.6
4,304,277	-		Rru_A3753	0.68	-2.0
4,304,350	+		Rru_A3753	0.69	-0.0
4,304,350	+		Rru_A3753	0.69	-1.2
4,304,351	-		Rru_A3753	0.69	-0.7
4,304,433	+		Rru_A3753	0.71	-0.7
4,304,433	+		Rru_A3753	0.71	-0.6
4,304,552	+		Rru_A3753	0.74	+1.0
4,304,645	-		Rru_A3753	0.76	-0.0
4,304,722	+		Rru_A3753	0.77	-0.0
4,304,722	+		Rru_A3753	0.77	-1.2
4,304,723	-		Rru_A3753	0.78	-0.0
4,304,723	-		Rru_A3753	0.78	-0.0
4,304,794	+		Rru_A3753	0.79	-1.0
4,304,843	+		Rru_A3753	0.80	-0.0
4,304,843	+		Rru_A3753	0.80	+0.2
4,304,843	+		Rru_A3753	0.80	-1.0
4,304,843	+		Rru_A3753	0.80	+0.2
4,304,843	+		Rru_A3753	0.80	-0.4
4,304,843	+		Rru_A3753	0.80	-0.0
4,304,844	-		Rru_A3753	0.80	-1.4
4,304,844	-		Rru_A3753	0.80	-0.7
4,304,844	-		Rru_A3753	0.80	-0.0
4,304,844	-		Rru_A3753	0.80	-0.0
4,304,844	-		Rru_A3753	0.80	-0.5
4,304,845	+		Rru_A3753	0.80	-0.0
4,304,845	+		Rru_A3753	0.80	-1.5
4,304,845	+		Rru_A3753	0.80	-1.2
4,304,846	-		Rru_A3753	0.80	-1.2
4,304,846	-		Rru_A3753	0.80	-0.0
4,304,846	-		Rru_A3753	0.80	-0.0
4,304,846	-		Rru_A3753	0.80	-1.5
4,304,846	-		Rru_A3753	0.80	-0.0
4,304,846	-		Rru_A3753	0.80	-1.0
4,304,846	-		Rru_A3753	0.80	-0.4
4,304,846	-		Rru_A3753	0.80	-1.6
4,304,846	-		Rru_A3753	0.80	-0.2
4,304,848	-		Rru_A3753	0.80	-0.9
4,304,848	-		Rru_A3753	0.80	-0.3
4,304,848	-		Rru_A3753	0.80	-0.0
4,304,868	+		Rru_A3753	0.81	-0.0
4,304,909	+		Rru_A3753	0.82	-0.5
4,304,909	+		Rru_A3753	0.82	-0.6
4,304,967	+		Rru_A3753	0.83	-0.9
4,304,967	+		Rru_A3753	0.83	-0.3
4,304,970	+		Rru_A3753	0.83	-1.0
4,304,970	+		Rru_A3753	0.83	-0.7
4,304,971	-		Rru_A3753	0.83	-1.3
4,304,971	-		Rru_A3753	0.83	-1.0
4,305,059	+		Rru_A3753	0.85	-2.1
4,305,060	-		Rru_A3753	0.85	-0.0
4,305,149	+		Rru_A3753	0.87	-0.8
4,305,218	+		Rru_A3753	0.88	+0.3
4,305,260	-		Rru_A3753	0.89	-0.0
4,305,433	-				-0.4
4,305,512	+				-0.3
4,305,512	+				-0.7
4,305,513	-				-0.0
4,305,513	-				-1.0
4,305,513	-				-1.8
4,305,516	+				-1.5
4,305,517	-				-1.2
4,305,517	-				-0.0
4,305,517	-				-1.5
4,305,517	-				-0.3
4,305,517	-				-2.2
4,305,517	-				-0.0
4,305,529	+				-0.0
4,305,529	+				-1.2
4,305,529	+				-0.0
4,305,530	-				-0.0
4,305,530	-				-0.0
4,305,530	-				-2.6
4,305,533	+				-0.0
4,305,534	-				-1.2
4,305,534	-				-0.0
4,305,534	-				-1.1
4,305,534	-				-0.9
4,305,614	-				-0.0
4,305,680	+				-0.0
4,305,681	-				-1.1
4,305,773	-				-0.6
4,305,845	+				-2.5
4,305,845	+				-0.0
4,305,879	+				-0.0
4,305,886	+				-1.0
4,305,984	+				-0.0
4,305,984	+				-0.0
4,305,984	+				-1.0
4,305,985	-				-0.0
4,306,115	+		Rru_A3754	0.60	-1.0
4,306,115	+		Rru_A3754	0.60	+1.0
4,306,116	-		Rru_A3754	0.61	-0.6
4,306,116	-		Rru_A3754	0.61	-0.0
4,306,116	-		Rru_A3754	0.61	-0.0
4,306,116	-		Rru_A3754	0.61	-1.0
4,306,285	+				-0.0
4,306,285	+				-0.0
4,306,285	+				-1.3
4,306,285	+				-1.0
4,306,437	+		Rru_A3755	0.15	-0.0
4,306,472	-		Rru_A3755	0.21	-0.0
4,306,722	+		Rru_A3755	0.66	-2.0
4,306,722	+		Rru_A3755	0.66	-0.3
4,306,722	+		Rru_A3755	0.66	-1.3
4,306,722	+		Rru_A3755	0.66	-0.0
4,306,722	+		Rru_A3755	0.66	-0.0
4,306,722	+		Rru_A3755	0.66	-0.0
4,306,722	+		Rru_A3755	0.66	-1.8
4,306,722	+		Rru_A3755	0.66	-0.9
4,306,722	+		Rru_A3755	0.66	-0.0
4,306,723	-		Rru_A3755	0.67	-1.7
4,306,723	-		Rru_A3755	0.67	-0.0
4,306,723	-		Rru_A3755	0.67	-0.0
4,306,723	-		Rru_A3755	0.67	-1.5
4,306,724	+		Rru_A3755	0.67	-0.0
4,306,724	+		Rru_A3755	0.67	-1.2
4,306,724	+		Rru_A3755	0.67	-0.0
4,306,724	+		Rru_A3755	0.67	-0.9
4,306,725	-		Rru_A3755	0.67	-0.0
4,306,734	-		Rru_A3755	0.69	-1.3