Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3739 and Rru_A3740 are separated by 357 nucleotides Rru_A3740 and Rru_A3741 overlap by 4 nucleotides Rru_A3741 and Rru_A3742 are separated by 25 nucleotides Rru_A3742 and Rru_A3743 overlap by 4 nucleotides
Rru_A3739: Rru_A3739 - hypothetical protein (NCBI), at 4,288,755 to 4,290,449
_A3739
Rru_A3740: Rru_A3740 - Shikimate kinase (NCBI), at 4,290,807 to 4,291,373
_A3740
Rru_A3741: Rru_A3741 - 3-dehydroquinate synthase (NCBI), at 4,291,370 to 4,292,527
_A3741
Rru_A3742: Rru_A3742 - CBS (NCBI), at 4,292,553 to 4,293,284
_A3742
Rru_A3743: Rru_A3743 - hypothetical protein (NCBI), at 4,293,281 to 4,293,442
_A3743
Position (kb) 4291
4292
4293 Strain fitness (log2 ratio) -2
-1
0
1 at 4290.667 kb on + strand at 4290.668 kb on - strand at 4290.686 kb on - strand at 4290.686 kb on - strand at 4290.686 kb on - strand at 4290.690 kb on - strand at 4290.720 kb on + strand at 4292.584 kb on + strand at 4292.584 kb on + strand at 4292.585 kb on - strand at 4292.585 kb on - strand at 4292.585 kb on - strand at 4292.896 kb on + strand, within Rru_A3742 at 4292.897 kb on - strand, within Rru_A3742 at 4293.072 kb on + strand, within Rru_A3742 at 4293.072 kb on + strand, within Rru_A3742 at 4293.073 kb on - strand, within Rru_A3742 at 4293.073 kb on - strand, within Rru_A3742 at 4293.073 kb on - strand, within Rru_A3742 at 4293.341 kb on - strand, within Rru_A3743 at 4293.516 kb on + strand at 4293.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 4,290,667 + -1.0 4,290,668 - -0.0 4,290,686 - -0.7 4,290,686 - -0.8 4,290,686 - -0.0 4,290,690 - -0.6 4,290,720 + -0.0 4,292,584 + -1.9 4,292,584 + -0.0 4,292,585 - -1.0 4,292,585 - -1.3 4,292,585 - -1.0 4,292,896 + Rru_A3742 0.47 -0.3 4,292,897 - Rru_A3742 0.47 -0.0 4,293,072 + Rru_A3742 0.71 -0.7 4,293,072 + Rru_A3742 0.71 -1.7 4,293,073 - Rru_A3742 0.71 -1.0 4,293,073 - Rru_A3742 0.71 -0.0 4,293,073 - Rru_A3742 0.71 -0.0 4,293,341 - Rru_A3743 0.37 -0.3 4,293,516 + -0.9 4,293,517 - -0.9
Or see this region's nucleotide sequence