Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3740

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3739 and Rru_A3740 are separated by 357 nucleotidesRru_A3740 and Rru_A3741 overlap by 4 nucleotides Rru_A3739: Rru_A3739 - hypothetical protein (NCBI), at 4,288,755 to 4,290,449 _A3739 Rru_A3740: Rru_A3740 - Shikimate kinase (NCBI), at 4,290,807 to 4,291,373 _A3740 Rru_A3741: Rru_A3741 - 3-dehydroquinate synthase (NCBI), at 4,291,370 to 4,292,527 _A3741 Position (kb) 4290 4291 4292Strain fitness (log2 ratio) -1 0 1at 4289.868 kb on + strand, within Rru_A3739at 4290.667 kb on + strandat 4290.668 kb on - strandat 4290.686 kb on - strandat 4290.686 kb on - strandat 4290.686 kb on - strandat 4290.690 kb on - strandat 4290.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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4,289,868 + Rru_A3739 0.66 -0.0
4,290,667 + -1.0
4,290,668 - -0.0
4,290,686 - -0.7
4,290,686 - -0.8
4,290,686 - -0.0
4,290,690 - -0.6
4,290,720 + -0.0

Or see this region's nucleotide sequence