Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3362

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3360 and Rru_A3361 are separated by 34 nucleotidesRru_A3361 and Rru_A3362 are separated by 18 nucleotidesRru_A3362 and Rru_A3363 are separated by 55 nucleotides Rru_A3360: Rru_A3360 - Electron transport protein SCO1/SenC (NCBI), at 3,873,035 to 3,873,667 _A3360 Rru_A3361: Rru_A3361 - hypothetical protein (NCBI), at 3,873,702 to 3,874,469 _A3361 Rru_A3362: Rru_A3362 - Uroporphyrin-III C-methyltransferase-like (NCBI), at 3,874,488 to 3,875,363 _A3362 Rru_A3363: Rru_A3363 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 3,875,419 to 3,876,966 _A3363 Position (kb) 3874 3875 3876Strain fitness (log2 ratio) -3 -2 -1 0 1at 3874.490 kb on - strandat 3874.688 kb on + strand, within Rru_A3362at 3874.688 kb on + strand, within Rru_A3362at 3874.805 kb on - strand, within Rru_A3362at 3874.805 kb on - strand, within Rru_A3362at 3874.937 kb on - strand, within Rru_A3362at 3875.109 kb on - strand, within Rru_A3362at 3875.121 kb on - strand, within Rru_A3362at 3875.374 kb on + strandat 3875.374 kb on + strandat 3875.374 kb on + strandat 3875.375 kb on - strandat 3875.437 kb on - strandat 3875.694 kb on + strand, within Rru_A3363at 3875.694 kb on + strand, within Rru_A3363at 3875.981 kb on + strand, within Rru_A3363at 3875.981 kb on + strand, within Rru_A3363at 3875.982 kb on - strand, within Rru_A3363at 3875.982 kb on - strand, within Rru_A3363at 3875.982 kb on - strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.042 kb on + strand, within Rru_A3363at 3876.043 kb on - strand, within Rru_A3363at 3876.043 kb on - strand, within Rru_A3363at 3876.043 kb on - strand, within Rru_A3363at 3876.043 kb on - strand, within Rru_A3363

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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3,874,490 - +0.0
3,874,688 + Rru_A3362 0.23 -1.0
3,874,688 + Rru_A3362 0.23 -1.0
3,874,805 - Rru_A3362 0.36 -1.0
3,874,805 - Rru_A3362 0.36 -2.9
3,874,937 - Rru_A3362 0.51 -1.4
3,875,109 - Rru_A3362 0.71 -1.6
3,875,121 - Rru_A3362 0.72 +0.0
3,875,374 + -1.3
3,875,374 + +0.0
3,875,374 + -1.2
3,875,375 - -1.0
3,875,437 - +0.0
3,875,694 + Rru_A3363 0.18 +0.0
3,875,694 + Rru_A3363 0.18 -0.2
3,875,981 + Rru_A3363 0.36 -0.4
3,875,981 + Rru_A3363 0.36 -1.2
3,875,982 - Rru_A3363 0.36 +0.0
3,875,982 - Rru_A3363 0.36 +0.0
3,875,982 - Rru_A3363 0.36 -0.5
3,876,042 + Rru_A3363 0.40 +0.0
3,876,042 + Rru_A3363 0.40 +0.0
3,876,042 + Rru_A3363 0.40 -2.8
3,876,042 + Rru_A3363 0.40 -0.1
3,876,042 + Rru_A3363 0.40 -0.7
3,876,042 + Rru_A3363 0.40 -1.0
3,876,042 + Rru_A3363 0.40 -0.9
3,876,042 + Rru_A3363 0.40 -0.8
3,876,043 - Rru_A3363 0.40 -1.1
3,876,043 - Rru_A3363 0.40 -0.4
3,876,043 - Rru_A3363 0.40 +1.5
3,876,043 - Rru_A3363 0.40 +0.0

Or see this region's nucleotide sequence