Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2765 and Rru_A2766 are separated by 44 nucleotides Rru_A2766 and Rru_A2767 are separated by 350 nucleotides Rru_A2767 and Rru_A2768 overlap by 8 nucleotides Rru_A2768 and Rru_A2769 are separated by 146 nucleotides
Rru_A2765: Rru_A2765 - GCN5-related N-acetyltransferase (NCBI), at 3,199,864 to 3,200,985
_A2765
Rru_A2766: Rru_A2766 - Protein of unknown function DUF329 (NCBI), at 3,201,030 to 3,201,266
_A2766
Rru_A2767: Rru_A2767 - ribonuclease G (RNase G) (NCBI), at 3,201,617 to 3,202,999
_A2767
Rru_A2768: Rru_A2768 - Maf-like protein (NCBI), at 3,202,992 to 3,203,624
_A2768
Rru_A2769: Rru_A2769 - Protein tyrosine phosphatase (NCBI), at 3,203,771 to 3,204,220
_A2769
Position (kb)
3201
3202
3203 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3200.759 kb on + strand, within Rru_A2765 at 3200.759 kb on + strand, within Rru_A2765 at 3200.760 kb on - strand, within Rru_A2765 at 3201.073 kb on + strand, within Rru_A2766 at 3201.074 kb on - strand, within Rru_A2766 at 3201.074 kb on - strand, within Rru_A2766 at 3201.258 kb on + strand at 3201.259 kb on - strand at 3201.266 kb on + strand at 3201.366 kb on + strand at 3201.367 kb on - strand at 3201.394 kb on + strand at 3201.395 kb on - strand at 3201.409 kb on + strand at 3201.409 kb on + strand at 3201.410 kb on - strand at 3201.436 kb on + strand at 3201.436 kb on + strand at 3201.437 kb on - strand at 3201.437 kb on - strand at 3201.478 kb on - strand at 3201.517 kb on + strand at 3201.518 kb on - strand at 3201.518 kb on - strand at 3202.638 kb on + strand, within Rru_A2767 at 3202.638 kb on + strand, within Rru_A2767 at 3202.645 kb on + strand, within Rru_A2767 at 3202.645 kb on + strand, within Rru_A2767 at 3202.646 kb on - strand, within Rru_A2767 at 3202.646 kb on - strand, within Rru_A2767 at 3202.646 kb on - strand, within Rru_A2767 at 3202.646 kb on - strand, within Rru_A2767 at 3202.647 kb on + strand, within Rru_A2767 at 3202.647 kb on + strand, within Rru_A2767 at 3202.647 kb on + strand, within Rru_A2767 at 3202.647 kb on + strand, within Rru_A2767 at 3202.648 kb on - strand, within Rru_A2767 at 3202.648 kb on - strand, within Rru_A2767 at 3202.648 kb on - strand, within Rru_A2767 at 3202.974 kb on + strand at 3202.974 kb on + strand at 3202.974 kb on + strand at 3202.974 kb on + strand at 3202.975 kb on - strand at 3202.975 kb on - strand at 3203.676 kb on + strand at 3203.694 kb on + strand at 3203.712 kb on + strand at 3203.712 kb on + strand at 3203.712 kb on + strand at 3203.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 3,200,759 + Rru_A2765 0.80 +0.0 3,200,759 + Rru_A2765 0.80 -0.0 3,200,760 - Rru_A2765 0.80 -0.9 3,201,073 + Rru_A2766 0.18 +1.3 3,201,074 - Rru_A2766 0.19 -0.3 3,201,074 - Rru_A2766 0.19 -3.6 3,201,258 + +0.0 3,201,259 - -1.1 3,201,266 + -0.5 3,201,366 + -0.3 3,201,367 - -0.4 3,201,394 + -1.5 3,201,395 - -0.2 3,201,409 + -0.5 3,201,409 + -0.6 3,201,410 - +0.0 3,201,436 + +0.0 3,201,436 + -1.0 3,201,437 - -0.9 3,201,437 - -0.1 3,201,478 - -0.7 3,201,517 + +0.0 3,201,518 - -0.6 3,201,518 - -0.7 3,202,638 + Rru_A2767 0.74 -0.7 3,202,638 + Rru_A2767 0.74 -1.6 3,202,645 + Rru_A2767 0.74 +0.0 3,202,645 + Rru_A2767 0.74 -1.3 3,202,646 - Rru_A2767 0.74 -1.4 3,202,646 - Rru_A2767 0.74 -0.9 3,202,646 - Rru_A2767 0.74 -2.1 3,202,646 - Rru_A2767 0.74 +0.0 3,202,647 + Rru_A2767 0.74 -0.4 3,202,647 + Rru_A2767 0.74 +0.0 3,202,647 + Rru_A2767 0.74 +0.0 3,202,647 + Rru_A2767 0.74 -1.9 3,202,648 - Rru_A2767 0.75 +0.0 3,202,648 - Rru_A2767 0.75 -1.6 3,202,648 - Rru_A2767 0.75 -1.0 3,202,974 + +0.0 3,202,974 + -1.0 3,202,974 + +1.0 3,202,974 + -0.9 3,202,975 - +0.4 3,202,975 - +0.0 3,203,676 + +0.0 3,203,694 + +0.0 3,203,712 + +0.0 3,203,712 + +0.0 3,203,712 + +0.0 3,203,713 - +0.0
Or see this region's nucleotide sequence