Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2433

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2432 and Rru_A2433 are separated by 254 nucleotidesRru_A2433 and Rru_A2434 are separated by 57 nucleotidesRru_A2434 and Rru_A2435 are separated by 17 nucleotides Rru_A2432: Rru_A2432 - bifunctional sulfur carrier protein/thiazole synthase protein (RefSeq), at 2,831,153 to 2,832,142 _A2432 Rru_A2433: Rru_A2433 - 3-dehydroquinate dehydratase (NCBI), at 2,832,397 to 2,832,846 _A2433 Rru_A2434: Rru_A2434 - Acetyl-CoA biotin carboxyl carrier (NCBI), at 2,832,904 to 2,833,344 _A2434 Rru_A2435: Rru_A2435 - Acetyl-CoA carboxylase, biotin carboxylase (NCBI), at 2,833,362 to 2,834,699 _A2435 Position (kb) 2832 2833Strain fitness (log2 ratio) -2 -1 0 1at 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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2,832,340 + +0.0
2,832,340 + -1.8
2,832,340 + -0.8
2,832,340 + -1.4
2,832,340 + -1.1
2,832,340 + +0.0
2,832,342 + -1.6

Or see this region's nucleotide sequence