Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1885

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1884 and Rru_A1885 are separated by 71 nucleotidesRru_A1885 and Rru_A1886 are separated by 17 nucleotidesRru_A1886 and Rru_A1887 are separated by 65 nucleotides Rru_A1884: Rru_A1884 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 2,182,500 to 2,183,540 _A1884 Rru_A1885: Rru_A1885 - Phosphopyruvate hydratase (NCBI), at 2,183,612 to 2,184,889 _A1885 Rru_A1886: Rru_A1886 - 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI), at 2,184,907 to 2,185,749 _A1886 Rru_A1887: Rru_A1887 - CTP synthase (NCBI), at 2,185,815 to 2,187,443 _A1887 Position (kb) 2183 2184 2185Strain fitness (log2 ratio) -1 0 1at 2182.834 kb on + strand, within Rru_A1884at 2182.885 kb on - strand, within Rru_A1884at 2183.194 kb on - strand, within Rru_A1884at 2183.194 kb on - strand, within Rru_A1884at 2183.499 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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2,182,834 + Rru_A1884 0.32 -0.0
2,182,885 - Rru_A1884 0.37 -0.0
2,183,194 - Rru_A1884 0.67 -0.5
2,183,194 - Rru_A1884 0.67 -0.0
2,183,499 + -0.8

Or see this region's nucleotide sequence