Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1309

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1308 and Rru_A1309 are separated by 32 nucleotidesRru_A1309 and Rru_A1310 are separated by 13 nucleotides Rru_A1308: Rru_A1308 - Acyl-CoA dehydrogenase (NCBI), at 1,542,228 to 1,544,018 _A1308 Rru_A1309: Rru_A1309 - acetoacetyl-CoA reductase (NCBI), at 1,544,051 to 1,546,375 _A1309 Rru_A1310: Rru_A1310 - Acetyl-CoA C-acyltransferase (NCBI), at 1,546,389 to 1,547,531 _A1310 Position (kb) 1544 1545 1546 1547Strain fitness (log2 ratio) -3 -2 -1 0 1at 1543.072 kb on + strand, within Rru_A1308at 1543.091 kb on - strand, within Rru_A1308at 1543.175 kb on + strand, within Rru_A1308at 1543.397 kb on + strand, within Rru_A1308at 1543.397 kb on + strand, within Rru_A1308at 1543.397 kb on + strand, within Rru_A1308at 1543.398 kb on - strand, within Rru_A1308at 1543.454 kb on + strand, within Rru_A1308at 1543.454 kb on + strand, within Rru_A1308at 1543.454 kb on + strand, within Rru_A1308at 1543.454 kb on + strand, within Rru_A1308at 1543.455 kb on - strand, within Rru_A1308at 1543.455 kb on - strand, within Rru_A1308at 1543.455 kb on - strand, within Rru_A1308at 1543.456 kb on + strand, within Rru_A1308at 1543.457 kb on - strand, within Rru_A1308at 1543.618 kb on + strand, within Rru_A1308at 1543.618 kb on + strand, within Rru_A1308at 1543.619 kb on - strand, within Rru_A1308at 1543.619 kb on - strand, within Rru_A1308at 1543.619 kb on - strand, within Rru_A1308at 1543.619 kb on - strand, within Rru_A1308at 1543.619 kb on - strand, within Rru_A1308at 1543.643 kb on - strand, within Rru_A1308at 1543.774 kb on + strand, within Rru_A1308at 1543.775 kb on - strand, within Rru_A1308at 1543.981 kb on + strandat 1543.981 kb on + strandat 1543.982 kb on - strandat 1544.052 kb on + strandat 1544.052 kb on + strandat 1544.052 kb on + strandat 1544.053 kb on - strandat 1544.053 kb on - strandat 1544.343 kb on + strand, within Rru_A1309at 1544.344 kb on - strand, within Rru_A1309at 1544.616 kb on + strand, within Rru_A1309at 1544.616 kb on + strand, within Rru_A1309at 1544.617 kb on - strand, within Rru_A1309at 1544.617 kb on - strand, within Rru_A1309at 1544.734 kb on - strand, within Rru_A1309at 1544.845 kb on + strand, within Rru_A1309at 1544.847 kb on + strand, within Rru_A1309at 1544.848 kb on - strand, within Rru_A1309at 1544.848 kb on - strand, within Rru_A1309at 1544.848 kb on - strand, within Rru_A1309at 1544.848 kb on - strand, within Rru_A1309at 1544.848 kb on - strand, within Rru_A1309at 1545.243 kb on + strand, within Rru_A1309at 1545.313 kb on - strand, within Rru_A1309at 1545.345 kb on + strand, within Rru_A1309at 1545.501 kb on + strand, within Rru_A1309at 1545.501 kb on + strand, within Rru_A1309at 1545.502 kb on - strand, within Rru_A1309at 1545.502 kb on - strand, within Rru_A1309at 1545.550 kb on + strand, within Rru_A1309at 1545.576 kb on + strand, within Rru_A1309at 1545.576 kb on + strand, within Rru_A1309at 1545.577 kb on - strand, within Rru_A1309at 1545.577 kb on - strand, within Rru_A1309at 1545.737 kb on - strand, within Rru_A1309at 1545.737 kb on - strand, within Rru_A1309at 1545.737 kb on - strand, within Rru_A1309at 1545.814 kb on + strand, within Rru_A1309at 1545.815 kb on - strand, within Rru_A1309at 1545.922 kb on - strand, within Rru_A1309at 1546.066 kb on - strand, within Rru_A1309at 1546.132 kb on + strand, within Rru_A1309at 1546.133 kb on - strand, within Rru_A1309at 1546.133 kb on - strand, within Rru_A1309at 1546.554 kb on - strand, within Rru_A1310at 1546.563 kb on - strand, within Rru_A1310at 1546.563 kb on - strand, within Rru_A1310at 1546.563 kb on - strand, within Rru_A1310at 1547.100 kb on - strand, within Rru_A1310at 1547.101 kb on + strand, within Rru_A1310at 1547.101 kb on + strand, within Rru_A1310at 1547.101 kb on + strand, within Rru_A1310at 1547.102 kb on - strand, within Rru_A1310

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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1,543,072 + Rru_A1308 0.47 -1.0
1,543,091 - Rru_A1308 0.48 -1.0
1,543,175 + Rru_A1308 0.53 +0.0
1,543,397 + Rru_A1308 0.65 -1.4
1,543,397 + Rru_A1308 0.65 -1.0
1,543,397 + Rru_A1308 0.65 +0.0
1,543,398 - Rru_A1308 0.65 +0.0
1,543,454 + Rru_A1308 0.68 -1.0
1,543,454 + Rru_A1308 0.68 -1.0
1,543,454 + Rru_A1308 0.68 +0.0
1,543,454 + Rru_A1308 0.68 -1.0
1,543,455 - Rru_A1308 0.69 +0.0
1,543,455 - Rru_A1308 0.69 -1.4
1,543,455 - Rru_A1308 0.69 -1.6
1,543,456 + Rru_A1308 0.69 -1.6
1,543,457 - Rru_A1308 0.69 +0.0
1,543,618 + Rru_A1308 0.78 -1.2
1,543,618 + Rru_A1308 0.78 -2.0
1,543,619 - Rru_A1308 0.78 -3.6
1,543,619 - Rru_A1308 0.78 -0.2
1,543,619 - Rru_A1308 0.78 -2.6
1,543,619 - Rru_A1308 0.78 +0.0
1,543,619 - Rru_A1308 0.78 +0.0
1,543,643 - Rru_A1308 0.79 -1.0
1,543,774 + Rru_A1308 0.86 +0.0
1,543,775 - Rru_A1308 0.86 +0.0
1,543,981 + +0.0
1,543,981 + -2.6
1,543,982 - +0.0
1,544,052 + +0.0
1,544,052 + +0.5
1,544,052 + +0.5
1,544,053 - -1.6
1,544,053 - +1.0
1,544,343 + Rru_A1309 0.13 +0.0
1,544,344 - Rru_A1309 0.13 +0.0
1,544,616 + Rru_A1309 0.24 +0.0
1,544,616 + Rru_A1309 0.24 +0.0
1,544,617 - Rru_A1309 0.24 +0.0
1,544,617 - Rru_A1309 0.24 -1.0
1,544,734 - Rru_A1309 0.29 +0.0
1,544,845 + Rru_A1309 0.34 +0.0
1,544,847 + Rru_A1309 0.34 +0.0
1,544,848 - Rru_A1309 0.34 +0.0
1,544,848 - Rru_A1309 0.34 +0.0
1,544,848 - Rru_A1309 0.34 +0.0
1,544,848 - Rru_A1309 0.34 +0.0
1,544,848 - Rru_A1309 0.34 +0.0
1,545,243 + Rru_A1309 0.51 +0.0
1,545,313 - Rru_A1309 0.54 +0.0
1,545,345 + Rru_A1309 0.56 +0.0
1,545,501 + Rru_A1309 0.62 +0.0
1,545,501 + Rru_A1309 0.62 +0.0
1,545,502 - Rru_A1309 0.62 -1.6
1,545,502 - Rru_A1309 0.62 +0.0
1,545,550 + Rru_A1309 0.64 +0.0
1,545,576 + Rru_A1309 0.66 +0.0
1,545,576 + Rru_A1309 0.66 +0.0
1,545,577 - Rru_A1309 0.66 +0.0
1,545,577 - Rru_A1309 0.66 +0.0
1,545,737 - Rru_A1309 0.73 +0.0
1,545,737 - Rru_A1309 0.73 +0.0
1,545,737 - Rru_A1309 0.73 +0.0
1,545,814 + Rru_A1309 0.76 +0.0
1,545,815 - Rru_A1309 0.76 +0.0
1,545,922 - Rru_A1309 0.80 +0.0
1,546,066 - Rru_A1309 0.87 +0.0
1,546,132 + Rru_A1309 0.90 +0.0
1,546,133 - Rru_A1309 0.90 -2.0
1,546,133 - Rru_A1309 0.90 +0.0
1,546,554 - Rru_A1310 0.14 -2.6
1,546,563 - Rru_A1310 0.15 +0.0
1,546,563 - Rru_A1310 0.15 +0.0
1,546,563 - Rru_A1310 0.15 -2.6
1,547,100 - Rru_A1310 0.62 +0.0
1,547,101 + Rru_A1310 0.62 +0.0
1,547,101 + Rru_A1310 0.62 -2.0
1,547,101 + Rru_A1310 0.62 +0.0
1,547,102 - Rru_A1310 0.62 -2.3

Or see this region's nucleotide sequence