Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1158

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1156 and Rru_A1157 are separated by 10 nucleotidesRru_A1157 and Rru_A1158 are separated by 81 nucleotidesRru_A1158 and Rru_A1159 overlap by 1 nucleotidesRru_A1159 and Rru_A1160 are separated by 38 nucleotides Rru_A1156: Rru_A1156 - Potassium-translocating P-type ATPase B subunit (NCBI), at 1,370,163 to 1,372,211 _A1156 Rru_A1157: Rru_A1157 - Potassium-transporting ATPase (NCBI), at 1,372,222 to 1,372,803 _A1157 Rru_A1158: Rru_A1158 - Osmosensitive K+ channel Signal Transduction Histidine Kinase (NCBI), at 1,372,885 to 1,375,578 _A1158 Rru_A1159: Rru_A1159 - Two component Transcriptional regulator, Winged helix family (NCBI), at 1,375,578 to 1,376,270 _A1159 Rru_A1160: Rru_A1160 - chemotaxis sensory transducer (NCBI), at 1,376,309 to 1,377,988 _A1160 Position (kb) 1372 1373 1374 1375 1376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1371.922 kb on - strand, within Rru_A1156at 1372.131 kb on + strandat 1372.131 kb on + strandat 1372.132 kb on - strandat 1372.181 kb on + strandat 1372.181 kb on + strandat 1372.182 kb on - strandat 1372.414 kb on + strand, within Rru_A1157at 1372.415 kb on - strand, within Rru_A1157at 1372.415 kb on - strand, within Rru_A1157at 1372.415 kb on - strand, within Rru_A1157at 1372.415 kb on - strand, within Rru_A1157at 1372.415 kb on - strand, within Rru_A1157at 1372.451 kb on - strand, within Rru_A1157at 1372.451 kb on - strand, within Rru_A1157at 1372.451 kb on - strand, within Rru_A1157at 1372.461 kb on + strand, within Rru_A1157at 1372.461 kb on + strand, within Rru_A1157at 1372.461 kb on + strand, within Rru_A1157at 1372.462 kb on - strand, within Rru_A1157at 1372.462 kb on - strand, within Rru_A1157at 1372.558 kb on + strand, within Rru_A1157at 1372.558 kb on + strand, within Rru_A1157at 1372.558 kb on + strand, within Rru_A1157at 1372.559 kb on - strand, within Rru_A1157at 1372.559 kb on - strand, within Rru_A1157at 1372.614 kb on + strand, within Rru_A1157at 1372.615 kb on - strand, within Rru_A1157at 1372.615 kb on - strand, within Rru_A1157at 1372.699 kb on + strand, within Rru_A1157at 1372.699 kb on + strand, within Rru_A1157at 1372.700 kb on - strand, within Rru_A1157at 1372.700 kb on - strand, within Rru_A1157at 1372.728 kb on + strand, within Rru_A1157at 1372.821 kb on - strandat 1372.970 kb on + strandat 1372.970 kb on + strandat 1372.970 kb on + strandat 1372.970 kb on + strandat 1372.970 kb on + strandat 1372.970 kb on + strandat 1372.971 kb on - strandat 1372.971 kb on - strandat 1372.971 kb on - strandat 1372.971 kb on - strandat 1372.971 kb on - strandat 1372.971 kb on - strandat 1373.006 kb on - strandat 1373.006 kb on - strandat 1373.144 kb on - strandat 1373.229 kb on + strand, within Rru_A1158at 1373.229 kb on + strand, within Rru_A1158at 1373.229 kb on + strand, within Rru_A1158at 1373.230 kb on - strand, within Rru_A1158at 1373.230 kb on - strand, within Rru_A1158at 1373.305 kb on + strand, within Rru_A1158at 1373.305 kb on + strand, within Rru_A1158at 1373.305 kb on + strand, within Rru_A1158at 1373.305 kb on + strand, within Rru_A1158at 1373.479 kb on + strand, within Rru_A1158at 1373.479 kb on + strand, within Rru_A1158at 1373.480 kb on - strand, within Rru_A1158at 1373.480 kb on - strand, within Rru_A1158at 1373.599 kb on + strand, within Rru_A1158at 1373.599 kb on + strand, within Rru_A1158at 1373.599 kb on + strand, within Rru_A1158at 1373.599 kb on + strand, within Rru_A1158at 1373.599 kb on + strand, within Rru_A1158at 1373.599 kb on + strand, within Rru_A1158at 1373.600 kb on - strand, within Rru_A1158at 1373.600 kb on - strand, within Rru_A1158at 1373.600 kb on - strand, within Rru_A1158at 1373.600 kb on - strand, within Rru_A1158at 1373.601 kb on + strand, within Rru_A1158at 1373.601 kb on + strand, within Rru_A1158at 1373.601 kb on + strand, within Rru_A1158at 1373.601 kb on + strand, within Rru_A1158at 1373.601 kb on + strand, within Rru_A1158at 1373.601 kb on + strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.602 kb on - strand, within Rru_A1158at 1373.743 kb on + strand, within Rru_A1158at 1373.743 kb on + strand, within Rru_A1158at 1373.743 kb on + strand, within Rru_A1158at 1373.743 kb on + strand, within Rru_A1158at 1373.743 kb on + strand, within Rru_A1158at 1373.744 kb on - strand, within Rru_A1158at 1373.744 kb on - strand, within Rru_A1158at 1373.744 kb on - strand, within Rru_A1158at 1373.744 kb on - strand, within Rru_A1158at 1373.744 kb on - strand, within Rru_A1158at 1373.744 kb on - strand, within Rru_A1158at 1373.898 kb on + strand, within Rru_A1158at 1373.899 kb on - strand, within Rru_A1158at 1374.083 kb on - strand, within Rru_A1158at 1374.172 kb on + strand, within Rru_A1158at 1374.173 kb on - strand, within Rru_A1158at 1374.253 kb on + strand, within Rru_A1158at 1374.253 kb on + strand, within Rru_A1158at 1374.254 kb on - strand, within Rru_A1158at 1374.307 kb on - strand, within Rru_A1158at 1374.307 kb on - strand, within Rru_A1158at 1374.307 kb on - strand, within Rru_A1158at 1374.425 kb on - strand, within Rru_A1158at 1374.955 kb on + strand, within Rru_A1158at 1374.955 kb on + strand, within Rru_A1158at 1375.053 kb on + strand, within Rru_A1158at 1375.114 kb on - strand, within Rru_A1158at 1375.261 kb on + strand, within Rru_A1158at 1375.261 kb on + strand, within Rru_A1158at 1375.261 kb on + strand, within Rru_A1158at 1375.262 kb on - strand, within Rru_A1158at 1375.262 kb on - strand, within Rru_A1158at 1375.656 kb on + strand, within Rru_A1159at 1375.657 kb on - strand, within Rru_A1159at 1375.872 kb on + strand, within Rru_A1159at 1375.872 kb on + strand, within Rru_A1159at 1375.873 kb on - strand, within Rru_A1159at 1375.873 kb on - strand, within Rru_A1159at 1376.055 kb on + strand, within Rru_A1159at 1376.055 kb on + strand, within Rru_A1159at 1376.055 kb on + strand, within Rru_A1159at 1376.056 kb on - strand, within Rru_A1159at 1376.169 kb on + strand, within Rru_A1159at 1376.169 kb on + strand, within Rru_A1159at 1376.169 kb on + strand, within Rru_A1159at 1376.169 kb on + strand, within Rru_A1159at 1376.169 kb on + strand, within Rru_A1159at 1376.170 kb on - strand, within Rru_A1159at 1376.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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1,371,922 - Rru_A1156 0.86 -1.0
1,372,131 + -0.0
1,372,131 + -0.0
1,372,132 - -1.4
1,372,181 + -0.0
1,372,181 + -0.0
1,372,182 - -1.0
1,372,414 + Rru_A1157 0.33 -0.0
1,372,415 - Rru_A1157 0.33 -0.9
1,372,415 - Rru_A1157 0.33 -1.0
1,372,415 - Rru_A1157 0.33 -0.4
1,372,415 - Rru_A1157 0.33 -0.4
1,372,415 - Rru_A1157 0.33 -1.1
1,372,451 - Rru_A1157 0.39 -0.6
1,372,451 - Rru_A1157 0.39 -0.0
1,372,451 - Rru_A1157 0.39 +1.0
1,372,461 + Rru_A1157 0.41 -0.1
1,372,461 + Rru_A1157 0.41 +0.7
1,372,461 + Rru_A1157 0.41 -0.0
1,372,462 - Rru_A1157 0.41 -0.0
1,372,462 - Rru_A1157 0.41 -0.3
1,372,558 + Rru_A1157 0.58 +1.0
1,372,558 + Rru_A1157 0.58 +1.2
1,372,558 + Rru_A1157 0.58 -0.4
1,372,559 - Rru_A1157 0.58 -0.3
1,372,559 - Rru_A1157 0.58 -1.0
1,372,614 + Rru_A1157 0.67 -0.0
1,372,615 - Rru_A1157 0.68 -0.0
1,372,615 - Rru_A1157 0.68 -1.0
1,372,699 + Rru_A1157 0.82 -1.6
1,372,699 + Rru_A1157 0.82 -0.7
1,372,700 - Rru_A1157 0.82 +0.1
1,372,700 - Rru_A1157 0.82 -0.0
1,372,728 + Rru_A1157 0.87 -0.0
1,372,821 - -0.0
1,372,970 + -0.5
1,372,970 + -0.8
1,372,970 + -0.0
1,372,970 + -2.2
1,372,970 + -1.0
1,372,970 + -0.8
1,372,971 - -0.0
1,372,971 - -0.0
1,372,971 - -0.5
1,372,971 - -0.7
1,372,971 - -0.0
1,372,971 - -1.2
1,373,006 - -0.7
1,373,006 - -0.0
1,373,144 - -1.1
1,373,229 + Rru_A1158 0.13 +0.6
1,373,229 + Rru_A1158 0.13 -2.0
1,373,229 + Rru_A1158 0.13 -0.9
1,373,230 - Rru_A1158 0.13 -0.9
1,373,230 - Rru_A1158 0.13 -0.8
1,373,305 + Rru_A1158 0.16 -0.0
1,373,305 + Rru_A1158 0.16 -0.5
1,373,305 + Rru_A1158 0.16 -1.5
1,373,305 + Rru_A1158 0.16 -0.0
1,373,479 + Rru_A1158 0.22 -1.0
1,373,479 + Rru_A1158 0.22 -0.0
1,373,480 - Rru_A1158 0.22 -1.2
1,373,480 - Rru_A1158 0.22 -1.1
1,373,599 + Rru_A1158 0.27 -1.0
1,373,599 + Rru_A1158 0.27 -0.0
1,373,599 + Rru_A1158 0.27 -0.0
1,373,599 + Rru_A1158 0.27 -0.0
1,373,599 + Rru_A1158 0.27 -0.0
1,373,599 + Rru_A1158 0.27 -1.6
1,373,600 - Rru_A1158 0.27 -1.6
1,373,600 - Rru_A1158 0.27 -1.0
1,373,600 - Rru_A1158 0.27 -0.3
1,373,600 - Rru_A1158 0.27 -0.0
1,373,601 + Rru_A1158 0.27 -1.2
1,373,601 + Rru_A1158 0.27 -1.2
1,373,601 + Rru_A1158 0.27 -0.7
1,373,601 + Rru_A1158 0.27 -0.3
1,373,601 + Rru_A1158 0.27 -1.6
1,373,601 + Rru_A1158 0.27 -0.1
1,373,602 - Rru_A1158 0.27 -1.9
1,373,602 - Rru_A1158 0.27 -0.0
1,373,602 - Rru_A1158 0.27 -0.0
1,373,602 - Rru_A1158 0.27 -0.0
1,373,602 - Rru_A1158 0.27 -0.0
1,373,602 - Rru_A1158 0.27 -1.4
1,373,602 - Rru_A1158 0.27 -1.3
1,373,743 + Rru_A1158 0.32 -0.0
1,373,743 + Rru_A1158 0.32 +0.4
1,373,743 + Rru_A1158 0.32 -1.6
1,373,743 + Rru_A1158 0.32 -1.8
1,373,743 + Rru_A1158 0.32 -0.0
1,373,744 - Rru_A1158 0.32 -0.0
1,373,744 - Rru_A1158 0.32 -1.4
1,373,744 - Rru_A1158 0.32 -0.0
1,373,744 - Rru_A1158 0.32 -0.0
1,373,744 - Rru_A1158 0.32 -0.0
1,373,744 - Rru_A1158 0.32 -0.0
1,373,898 + Rru_A1158 0.38 -0.3
1,373,899 - Rru_A1158 0.38 -0.0
1,374,083 - Rru_A1158 0.44 -0.3
1,374,172 + Rru_A1158 0.48 -0.0
1,374,173 - Rru_A1158 0.48 -0.0
1,374,253 + Rru_A1158 0.51 -2.0
1,374,253 + Rru_A1158 0.51 -0.0
1,374,254 - Rru_A1158 0.51 -0.0
1,374,307 - Rru_A1158 0.53 -0.0
1,374,307 - Rru_A1158 0.53 -0.0
1,374,307 - Rru_A1158 0.53 -0.0
1,374,425 - Rru_A1158 0.57 +0.2
1,374,955 + Rru_A1158 0.77 -0.0
1,374,955 + Rru_A1158 0.77 -0.0
1,375,053 + Rru_A1158 0.80 -0.0
1,375,114 - Rru_A1158 0.83 -0.3
1,375,261 + Rru_A1158 0.88 -3.8
1,375,261 + Rru_A1158 0.88 -0.0
1,375,261 + Rru_A1158 0.88 -0.7
1,375,262 - Rru_A1158 0.88 -2.0
1,375,262 - Rru_A1158 0.88 -1.3
1,375,656 + Rru_A1159 0.11 -0.5
1,375,657 - Rru_A1159 0.11 -1.1
1,375,872 + Rru_A1159 0.42 +0.2
1,375,872 + Rru_A1159 0.42 -0.0
1,375,873 - Rru_A1159 0.43 -0.0
1,375,873 - Rru_A1159 0.43 -0.0
1,376,055 + Rru_A1159 0.69 -0.3
1,376,055 + Rru_A1159 0.69 -2.3
1,376,055 + Rru_A1159 0.69 -0.0
1,376,056 - Rru_A1159 0.69 -0.7
1,376,169 + Rru_A1159 0.85 -0.0
1,376,169 + Rru_A1159 0.85 -0.5
1,376,169 + Rru_A1159 0.85 +0.5
1,376,169 + Rru_A1159 0.85 -0.0
1,376,169 + Rru_A1159 0.85 +1.4
1,376,170 - Rru_A1159 0.85 -0.0
1,376,269 - -0.0

Or see this region's nucleotide sequence