Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0855 and Rru_A0856 are separated by 148 nucleotides Rru_A0856 and Rru_A0857 are separated by 59 nucleotides
Rru_A0855: Rru_A0855 - Asparagine synthase (NCBI), at 1,018,004 to 1,019,938
_A0855
Rru_A0856: Rru_A0856 - hypothetical protein (NCBI), at 1,020,087 to 1,020,992
_A0856
Rru_A0857: Rru_A0857 - Sulfotransferase (NCBI), at 1,021,052 to 1,021,921
_A0857
Position (kb) 1020
1021 Strain fitness (log2 ratio) -2
-1
0
1 at 1019.229 kb on + strand, within Rru_A0855 at 1019.229 kb on + strand, within Rru_A0855 at 1019.230 kb on - strand, within Rru_A0855 at 1019.352 kb on + strand, within Rru_A0855 at 1019.353 kb on - strand, within Rru_A0855 at 1019.353 kb on - strand, within Rru_A0855 at 1019.493 kb on + strand, within Rru_A0855 at 1019.494 kb on - strand, within Rru_A0855 at 1019.494 kb on - strand, within Rru_A0855 at 1019.616 kb on + strand, within Rru_A0855 at 1019.616 kb on + strand, within Rru_A0855 at 1019.616 kb on + strand, within Rru_A0855 at 1019.616 kb on + strand, within Rru_A0855 at 1019.617 kb on - strand, within Rru_A0855 at 1019.617 kb on - strand, within Rru_A0855 at 1019.617 kb on - strand, within Rru_A0855 at 1019.617 kb on - strand, within Rru_A0855 at 1019.981 kb on + strand at 1019.981 kb on + strand at 1019.981 kb on + strand at 1019.981 kb on + strand at 1019.981 kb on + strand at 1019.981 kb on + strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1019.982 kb on - strand at 1020.018 kb on + strand at 1020.702 kb on + strand, within Rru_A0856 at 1020.990 kb on + strand at 1021.053 kb on + strand at 1021.054 kb on - strand at 1021.054 kb on - strand at 1021.341 kb on - strand, within Rru_A0857 at 1021.364 kb on + strand, within Rru_A0857 at 1021.365 kb on - strand, within Rru_A0857 at 1021.514 kb on + strand, within Rru_A0857 at 1021.665 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.721 kb on - strand, within Rru_A0857 at 1021.848 kb on + strand at 1021.848 kb on + strand at 1021.915 kb on + strand at 1021.915 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 1,019,229 + Rru_A0855 0.63 +0.0 1,019,229 + Rru_A0855 0.63 +0.0 1,019,230 - Rru_A0855 0.63 -0.9 1,019,352 + Rru_A0855 0.70 +0.2 1,019,353 - Rru_A0855 0.70 -0.9 1,019,353 - Rru_A0855 0.70 +0.2 1,019,493 + Rru_A0855 0.77 -0.4 1,019,494 - Rru_A0855 0.77 +0.6 1,019,494 - Rru_A0855 0.77 -0.6 1,019,616 + Rru_A0855 0.83 -1.5 1,019,616 + Rru_A0855 0.83 +0.0 1,019,616 + Rru_A0855 0.83 -0.4 1,019,616 + Rru_A0855 0.83 -0.3 1,019,617 - Rru_A0855 0.83 +0.0 1,019,617 - Rru_A0855 0.83 -1.3 1,019,617 - Rru_A0855 0.83 +0.0 1,019,617 - Rru_A0855 0.83 -1.0 1,019,981 + -0.9 1,019,981 + -0.1 1,019,981 + -2.2 1,019,981 + -0.5 1,019,981 + +0.0 1,019,981 + +0.0 1,019,982 - -0.3 1,019,982 - +0.0 1,019,982 - -0.3 1,019,982 - +0.7 1,019,982 - +0.0 1,019,982 - -0.8 1,019,982 - +1.0 1,019,982 - -1.0 1,019,982 - -0.7 1,019,982 - +0.0 1,019,982 - -0.9 1,020,018 + -0.7 1,020,702 + Rru_A0856 0.68 +0.0 1,020,990 + +0.0 1,021,053 + -1.5 1,021,054 - +0.0 1,021,054 - +0.0 1,021,341 - Rru_A0857 0.33 -0.6 1,021,364 + Rru_A0857 0.36 -0.8 1,021,365 - Rru_A0857 0.36 -0.9 1,021,514 + Rru_A0857 0.53 +0.0 1,021,665 + Rru_A0857 0.70 -1.0 1,021,720 + Rru_A0857 0.77 -1.0 1,021,720 + Rru_A0857 0.77 +0.4 1,021,720 + Rru_A0857 0.77 +0.0 1,021,720 + Rru_A0857 0.77 +0.0 1,021,721 - Rru_A0857 0.77 +0.0 1,021,848 + +0.0 1,021,848 + -0.6 1,021,915 + -0.4 1,021,915 + +0.0
Or see this region's nucleotide sequence