Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0018

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_AR0018 and Rru_AR0019 are separated by 182 nucleotidesRru_AR0019 and Rru_AR0020 are separated by 66 nucleotidesRru_AR0020 and Rru_AR0021 are separated by 361 nucleotides Rru_AR0018: Rru_AR0018 - 16S ribosomal RNA (NCBI), at 911,398 to 912,874 _AR0018 Rru_AR0019: Rru_AR0019 - tRNA-Ile (NCBI), at 913,057 to 913,133 _AR0019 Rru_AR0020: Rru_AR0020 - tRNA-Ala (NCBI), at 913,200 to 913,275 _AR0020 Rru_AR0021: Rru_AR0021 - 23S ribosomal RNA (NCBI), at 913,637 to 916,394 _AR0021 Position (kb) 911 912 913Strain fitness (log2 ratio) -1 0 1at 910.624 kb on + strandat 910.624 kb on + strandat 910.625 kb on - strandat 910.634 kb on + strandat 910.725 kb on - strandat 911.145 kb on + strandat 911.146 kb on - strandat 911.153 kb on - strandat 913.460 kb on - strandat 913.580 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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910,624 + -1.0
910,624 + -0.9
910,625 - -0.3
910,634 + -0.8
910,725 - +0.0
911,145 + -1.5
911,146 - -0.2
911,153 - -0.4
913,460 - +0.0
913,580 + -0.6

Or see this region's nucleotide sequence