Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0747

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0746 and Rru_A0747 are separated by 134 nucleotidesRru_A0747 and Rru_A0748 are separated by 126 nucleotides Rru_A0746: Rru_A0746 - hypothetical protein (NCBI), at 873,473 to 875,005 _A0746 Rru_A0747: Rru_A0747 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI), at 875,140 to 876,294 _A0747 Rru_A0748: Rru_A0748 - Histidyl-tRNA synthetase, class IIa (NCBI), at 876,421 to 877,668 _A0748 Position (kb) 875 876 877Strain fitness (log2 ratio) -2 -1 0 1at 874.847 kb on + strand, within Rru_A0746at 874.847 kb on + strand, within Rru_A0746at 874.847 kb on + strand, within Rru_A0746at 874.848 kb on - strand, within Rru_A0746at 874.848 kb on - strand, within Rru_A0746at 874.848 kb on - strand, within Rru_A0746at 874.910 kb on + strandat 874.911 kb on - strandat 875.012 kb on + strandat 875.016 kb on + strandat 875.016 kb on + strandat 876.292 kb on + strandat 876.293 kb on - strandat 876.293 kb on - strandat 876.405 kb on + strandat 876.406 kb on - strandat 876.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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874,847 + Rru_A0746 0.90 +0.0
874,847 + Rru_A0746 0.90 +0.0
874,847 + Rru_A0746 0.90 +1.0
874,848 - Rru_A0746 0.90 +0.0
874,848 - Rru_A0746 0.90 +0.0
874,848 - Rru_A0746 0.90 +0.0
874,910 + -0.6
874,911 - -1.4
875,012 + -1.0
875,016 + -0.3
875,016 + -1.2
876,292 + +0.5
876,293 - -0.7
876,293 - -1.8
876,405 + +0.3
876,406 - +0.0
876,406 - +1.0

Or see this region's nucleotide sequence