Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0659 and Rru_A0660 overlap by 4 nucleotides Rru_A0660 and Rru_A0661 are separated by 172 nucleotides Rru_A0661 and Rru_A0662 are separated by 14 nucleotides
Rru_A0659: Rru_A0659 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation (NCBI), at 781,071 to 783,371
_A0659
Rru_A0660: Rru_A0660 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 783,368 to 785,245
_A0660
Rru_A0661: Rru_A0661 - Hly-III related proteins (NCBI), at 785,418 to 786,056
_A0661
Rru_A0662: Rru_A0662 - Translation initiation factor IF-1 (NCBI), at 786,071 to 786,358
_A0662
Position (kb) 783
784
785
786 Strain fitness (log2 ratio) -1
0
1 at 782.546 kb on + strand, within Rru_A0659 at 782.546 kb on + strand, within Rru_A0659 at 782.547 kb on - strand, within Rru_A0659 at 782.548 kb on + strand, within Rru_A0659 at 782.549 kb on - strand, within Rru_A0659 at 782.549 kb on - strand, within Rru_A0659 at 782.549 kb on - strand, within Rru_A0659 at 782.549 kb on - strand, within Rru_A0659 at 782.549 kb on - strand, within Rru_A0659 at 782.549 kb on - strand, within Rru_A0659 at 782.911 kb on + strand, within Rru_A0659 at 782.977 kb on + strand, within Rru_A0659 at 782.992 kb on + strand, within Rru_A0659 at 782.992 kb on + strand, within Rru_A0659 at 782.992 kb on + strand, within Rru_A0659 at 782.993 kb on - strand, within Rru_A0659 at 782.993 kb on - strand, within Rru_A0659 at 783.023 kb on - strand, within Rru_A0659 at 783.170 kb on + strand at 783.171 kb on - strand at 783.191 kb on + strand at 783.192 kb on - strand at 783.194 kb on - strand at 783.194 kb on - strand at 783.217 kb on + strand at 783.218 kb on - strand at 783.449 kb on - strand at 783.519 kb on + strand at 783.519 kb on + strand at 783.520 kb on - strand at 783.568 kb on + strand, within Rru_A0660 at 783.656 kb on + strand, within Rru_A0660 at 783.656 kb on + strand, within Rru_A0660 at 783.657 kb on - strand, within Rru_A0660 at 783.657 kb on - strand, within Rru_A0660 at 783.922 kb on + strand, within Rru_A0660 at 783.922 kb on + strand, within Rru_A0660 at 783.922 kb on + strand, within Rru_A0660 at 783.923 kb on - strand, within Rru_A0660 at 784.263 kb on + strand, within Rru_A0660 at 784.807 kb on - strand, within Rru_A0660 at 784.807 kb on - strand, within Rru_A0660 at 784.834 kb on + strand, within Rru_A0660 at 785.116 kb on + strand at 785.117 kb on - strand at 785.118 kb on + strand at 785.118 kb on + strand at 785.118 kb on + strand at 785.119 kb on - strand at 785.119 kb on - strand at 785.260 kb on - strand at 785.260 kb on - strand at 785.260 kb on - strand at 785.295 kb on + strand at 785.325 kb on + strand at 785.326 kb on - strand at 785.328 kb on - strand at 785.420 kb on - strand at 785.432 kb on - strand at 785.434 kb on + strand at 785.539 kb on + strand, within Rru_A0661 at 785.639 kb on - strand, within Rru_A0661 at 785.776 kb on + strand, within Rru_A0661 at 785.776 kb on + strand, within Rru_A0661 at 785.829 kb on - strand, within Rru_A0661 at 785.858 kb on + strand, within Rru_A0661 at 785.859 kb on - strand, within Rru_A0661 at 785.861 kb on - strand, within Rru_A0661 at 786.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 782,546 + Rru_A0659 0.64 -0.5 782,546 + Rru_A0659 0.64 +0.0 782,547 - Rru_A0659 0.64 -1.0 782,548 + Rru_A0659 0.64 -0.3 782,549 - Rru_A0659 0.64 +0.0 782,549 - Rru_A0659 0.64 +0.0 782,549 - Rru_A0659 0.64 +0.0 782,549 - Rru_A0659 0.64 +0.0 782,549 - Rru_A0659 0.64 -0.5 782,549 - Rru_A0659 0.64 +0.0 782,911 + Rru_A0659 0.80 -0.6 782,977 + Rru_A0659 0.83 +0.0 782,992 + Rru_A0659 0.83 -1.4 782,992 + Rru_A0659 0.83 -0.5 782,992 + Rru_A0659 0.83 -0.6 782,993 - Rru_A0659 0.84 +0.0 782,993 - Rru_A0659 0.84 -1.0 783,023 - Rru_A0659 0.85 -0.9 783,170 + +0.0 783,171 - +0.0 783,191 + +0.0 783,192 - -0.8 783,194 - -0.8 783,194 - -0.3 783,217 + +0.0 783,218 - -0.3 783,449 - -0.7 783,519 + +0.0 783,519 + -0.4 783,520 - +0.0 783,568 + Rru_A0660 0.11 +0.0 783,656 + Rru_A0660 0.15 +0.0 783,656 + Rru_A0660 0.15 +0.0 783,657 - Rru_A0660 0.15 +0.0 783,657 - Rru_A0660 0.15 +0.0 783,922 + Rru_A0660 0.29 +0.0 783,922 + Rru_A0660 0.29 -0.6 783,922 + Rru_A0660 0.29 +0.0 783,923 - Rru_A0660 0.30 +0.0 784,263 + Rru_A0660 0.48 +0.2 784,807 - Rru_A0660 0.77 +0.0 784,807 - Rru_A0660 0.77 +0.0 784,834 + Rru_A0660 0.78 +0.0 785,116 + -1.1 785,117 - +0.0 785,118 + -0.9 785,118 + -1.5 785,118 + -1.0 785,119 - -1.3 785,119 - -1.1 785,260 - -0.9 785,260 - +0.0 785,260 - -1.1 785,295 + -0.2 785,325 + +0.0 785,326 - +0.0 785,328 - -0.2 785,420 - -0.9 785,432 - +0.0 785,434 + +0.0 785,539 + Rru_A0661 0.19 +0.2 785,639 - Rru_A0661 0.35 +0.0 785,776 + Rru_A0661 0.56 -0.2 785,776 + Rru_A0661 0.56 -1.2 785,829 - Rru_A0661 0.64 +0.0 785,858 + Rru_A0661 0.69 +0.0 785,859 - Rru_A0661 0.69 +0.3 785,861 - Rru_A0661 0.69 +0.0 786,030 - +0.0
Or see this region's nucleotide sequence