Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0632

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0631 and Rru_A0632 are separated by 435 nucleotidesRru_A0632 and Rru_A0633 are separated by 12 nucleotidesRru_A0633 and Rru_A0634 are separated by 11 nucleotides Rru_A0631: Rru_A0631 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 749,503 to 750,855 _A0631 Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501 _A0632 Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143 _A0633 Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969 _A0634 Position (kb) 751 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1at 750.331 kb on - strand, within Rru_A0631at 750.861 kb on - strandat 750.862 kb on + strandat 750.862 kb on + strandat 750.863 kb on - strandat 750.868 kb on - strandat 750.902 kb on + strandat 750.902 kb on + strandat 750.904 kb on + strandat 750.904 kb on + strandat 750.904 kb on + strandat 750.904 kb on + strandat 750.905 kb on - strandat 750.905 kb on - strandat 750.905 kb on - strandat 751.011 kb on + strandat 751.012 kb on - strandat 751.061 kb on + strandat 751.061 kb on + strandat 751.062 kb on - strandat 751.062 kb on - strandat 751.105 kb on + strandat 751.105 kb on + strandat 751.105 kb on + strandat 751.106 kb on - strandat 751.106 kb on - strandat 751.106 kb on - strandat 751.222 kb on + strandat 751.239 kb on - strandat 751.241 kb on + strandat 751.241 kb on + strandat 751.242 kb on - strandat 751.264 kb on + strandat 751.264 kb on + strandat 751.264 kb on + strandat 751.265 kb on - strandat 751.265 kb on - strandat 751.265 kb on - strandat 751.337 kb on - strandat 751.419 kb on - strandat 751.625 kb on - strand, within Rru_A0632at 751.656 kb on + strand, within Rru_A0632at 751.656 kb on + strand, within Rru_A0632at 751.799 kb on - strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.894 kb on + strand, within Rru_A0632at 751.895 kb on - strand, within Rru_A0632at 751.895 kb on - strand, within Rru_A0632at 751.895 kb on - strand, within Rru_A0632at 753.048 kb on + strand, within Rru_A0632at 753.049 kb on - strand, within Rru_A0632at 753.156 kb on + strand, within Rru_A0632at 753.156 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.433 kb on + strandat 753.433 kb on + strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.555 kb on - strandat 753.555 kb on - strandat 753.661 kb on - strand, within Rru_A0633at 753.661 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.791 kb on + strand, within Rru_A0633at 753.792 kb on - strand, within Rru_A0633at 753.794 kb on + strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.088 kb on + strandat 754.088 kb on + strandat 754.088 kb on + strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.156 kb on + strandat 754.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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750,331 - Rru_A0631 0.61 -1.1
750,861 - +1.0
750,862 + -0.0
750,862 + -0.8
750,863 - -1.2
750,868 - -0.0
750,902 + -0.2
750,902 + -0.0
750,904 + -0.0
750,904 + -0.0
750,904 + -1.7
750,904 + -2.3
750,905 - -0.5
750,905 - -1.0
750,905 - -2.5
751,011 + -0.0
751,012 - -0.4
751,061 + -1.2
751,061 + -0.0
751,062 - -1.2
751,062 - -0.2
751,105 + -0.7
751,105 + -0.0
751,105 + -0.0
751,106 - -0.8
751,106 - -0.0
751,106 - -0.6
751,222 + -0.0
751,239 - -0.6
751,241 + -0.2
751,241 + +0.1
751,242 - -0.7
751,264 + +0.2
751,264 + -0.3
751,264 + -0.3
751,265 - -0.0
751,265 - -2.0
751,265 - -1.0
751,337 - +0.1
751,419 - -1.3
751,625 - Rru_A0632 0.15 -0.0
751,656 + Rru_A0632 0.17 -0.0
751,656 + Rru_A0632 0.17 -1.0
751,799 - Rru_A0632 0.23 -0.0
751,846 + Rru_A0632 0.25 -0.8
751,846 + Rru_A0632 0.25 -0.3
751,846 + Rru_A0632 0.25 +0.1
751,846 + Rru_A0632 0.25 -0.0
751,846 + Rru_A0632 0.25 -0.0
751,847 - Rru_A0632 0.25 -0.4
751,847 - Rru_A0632 0.25 -0.0
751,847 - Rru_A0632 0.25 -0.7
751,847 - Rru_A0632 0.25 -1.0
751,894 + Rru_A0632 0.27 -1.1
751,894 + Rru_A0632 0.27 -1.9
751,894 + Rru_A0632 0.27 -0.4
751,894 + Rru_A0632 0.27 +0.3
751,894 + Rru_A0632 0.27 -0.2
751,894 + Rru_A0632 0.27 -1.6
751,894 + Rru_A0632 0.27 -0.2
751,895 - Rru_A0632 0.27 -1.0
751,895 - Rru_A0632 0.27 -0.0
751,895 - Rru_A0632 0.27 -0.0
753,048 + Rru_A0632 0.79 -0.7
753,049 - Rru_A0632 0.80 -0.5
753,156 + Rru_A0632 0.84 -1.0
753,156 + Rru_A0632 0.84 -1.0
753,166 + Rru_A0632 0.85 -0.4
753,166 + Rru_A0632 0.85 -1.8
753,166 + Rru_A0632 0.85 -0.5
753,433 + +0.0
753,433 + -1.2
753,434 - +1.6
753,434 - +0.0
753,434 - -1.0
753,434 - -0.7
753,434 - -0.3
753,434 - -0.2
753,434 - +0.0
753,434 - +0.0
753,434 - -1.3
753,554 + -0.5
753,554 + -0.6
753,554 + -0.1
753,555 - -0.4
753,555 - +0.0
753,661 - Rru_A0633 0.23 +1.6
753,661 - Rru_A0633 0.23 -0.5
753,663 - Rru_A0633 0.24 -0.3
753,663 - Rru_A0633 0.24 +0.0
753,663 - Rru_A0633 0.24 -2.8
753,791 + Rru_A0633 0.44 +0.0
753,792 - Rru_A0633 0.44 +0.0
753,794 + Rru_A0633 0.44 -0.4
753,795 - Rru_A0633 0.45 +0.0
753,795 - Rru_A0633 0.45 +0.0
754,051 + Rru_A0633 0.85 -0.4
754,051 + Rru_A0633 0.85 -2.1
754,051 + Rru_A0633 0.85 +0.4
754,051 + Rru_A0633 0.85 +0.0
754,088 + -1.2
754,088 + +0.0
754,088 + +0.0
754,089 - -1.0
754,089 - -0.7
754,089 - +1.0
754,156 + -0.7
754,235 + +0.0

Or see this region's nucleotide sequence