Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0486 and Rru_A0487 are separated by 47 nucleotides Rru_A0487 and Rru_A0488 are separated by 336 nucleotides
Rru_A0486: Rru_A0486 - von Willebrand factor, type A (NCBI), at 570,084 to 571,901
_A0486
Rru_A0487: Rru_A0487 - Alpha/beta hydrolase fold (NCBI), at 571,949 to 572,881
_A0487
Rru_A0488: Rru_A0488 - TonB-dependent receptor (NCBI), at 573,218 to 575,266
_A0488
Position (kb) 571
572
573 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 571.446 kb on + strand, within Rru_A0486 at 571.446 kb on + strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.836 kb on + strand at 571.836 kb on + strand at 571.836 kb on + strand at 571.868 kb on + strand at 571.868 kb on + strand at 571.868 kb on + strand at 571.869 kb on - strand at 571.869 kb on - strand at 571.869 kb on - strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.446 kb on + strand, within Rru_A0487 at 572.446 kb on + strand, within Rru_A0487 at 572.447 kb on - strand, within Rru_A0487 at 572.447 kb on - strand, within Rru_A0487 at 572.447 kb on - strand, within Rru_A0487 at 572.483 kb on + strand, within Rru_A0487 at 572.483 kb on + strand, within Rru_A0487 at 572.483 kb on + strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.576 kb on + strand, within Rru_A0487 at 572.577 kb on - strand, within Rru_A0487 at 572.937 kb on - strand at 572.954 kb on - strand at 573.043 kb on - strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.132 kb on - strand at 573.132 kb on - strand at 573.132 kb on - strand at 573.186 kb on + strand at 573.186 kb on + strand at 573.186 kb on + strand at 573.187 kb on - strand at 573.187 kb on - strand at 573.281 kb on + strand at 573.512 kb on + strand, within Rru_A0488 at 573.513 kb on - strand, within Rru_A0488 at 573.668 kb on + strand, within Rru_A0488
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 571,446 + Rru_A0486 0.75 -2.8 571,446 + Rru_A0486 0.75 +0.0 571,447 - Rru_A0486 0.75 -1.5 571,447 - Rru_A0486 0.75 -2.0 571,447 - Rru_A0486 0.75 -2.4 571,447 - Rru_A0486 0.75 +0.0 571,836 + -1.0 571,836 + -2.3 571,836 + -1.5 571,868 + +0.0 571,868 + +0.0 571,868 + -1.0 571,869 - +0.0 571,869 - +0.0 571,869 - +0.0 571,934 + -0.2 571,934 + -0.6 571,934 + -0.6 571,934 + -1.0 571,934 + -1.0 571,934 + +0.0 571,934 + -2.1 571,934 + -1.0 571,934 + +0.0 571,935 - +0.0 571,935 - -0.7 571,935 - +0.0 571,935 - +0.0 571,935 - +0.0 571,935 - +0.2 571,935 - -0.3 571,935 - -1.5 571,935 - +0.0 571,935 - +0.0 571,935 - +0.9 572,444 + Rru_A0487 0.53 -1.7 572,444 + Rru_A0487 0.53 +0.0 572,444 + Rru_A0487 0.53 -1.8 572,444 + Rru_A0487 0.53 +0.0 572,444 + Rru_A0487 0.53 +0.0 572,444 + Rru_A0487 0.53 +0.0 572,446 + Rru_A0487 0.53 +0.0 572,446 + Rru_A0487 0.53 +0.0 572,447 - Rru_A0487 0.53 -1.8 572,447 - Rru_A0487 0.53 -2.7 572,447 - Rru_A0487 0.53 -2.9 572,483 + Rru_A0487 0.57 +0.0 572,483 + Rru_A0487 0.57 +0.0 572,483 + Rru_A0487 0.57 -3.4 572,484 - Rru_A0487 0.57 -2.9 572,484 - Rru_A0487 0.57 -3.4 572,484 - Rru_A0487 0.57 +0.0 572,484 - Rru_A0487 0.57 -3.8 572,484 - Rru_A0487 0.57 -2.9 572,484 - Rru_A0487 0.57 +0.0 572,573 + Rru_A0487 0.67 -2.5 572,573 + Rru_A0487 0.67 -2.7 572,573 + Rru_A0487 0.67 -1.0 572,573 + Rru_A0487 0.67 -3.1 572,574 - Rru_A0487 0.67 -2.0 572,574 - Rru_A0487 0.67 -3.0 572,574 - Rru_A0487 0.67 -1.7 572,574 - Rru_A0487 0.67 +0.0 572,574 - Rru_A0487 0.67 -3.0 572,574 - Rru_A0487 0.67 +0.0 572,574 - Rru_A0487 0.67 +0.0 572,574 - Rru_A0487 0.67 -3.5 572,576 + Rru_A0487 0.67 -2.3 572,577 - Rru_A0487 0.67 -3.2 572,937 - -0.3 572,954 - -1.0 573,043 - +0.3 573,131 + +0.0 573,131 + -1.8 573,131 + -0.4 573,131 + -0.2 573,131 + +0.0 573,132 - -0.1 573,132 - +0.0 573,132 - +0.0 573,186 + +0.0 573,186 + -1.1 573,186 + +0.0 573,187 - -1.0 573,187 - -1.0 573,281 + -1.0 573,512 + Rru_A0488 0.14 +0.0 573,513 - Rru_A0488 0.14 +0.0 573,668 + Rru_A0488 0.22 +0.0
Or see this region's nucleotide sequence