Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0448

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0446 and Rru_A0447 are separated by 13 nucleotidesRru_A0447 and Rru_A0448 are separated by 9 nucleotidesRru_A0448 and Rru_A0449 are separated by 216 nucleotides Rru_A0446: Rru_A0446 - hypothetical protein (NCBI), at 524,908 to 525,354 _A0446 Rru_A0447: Rru_A0447 - AMMECR1 (NCBI), at 525,368 to 526,132 _A0447 Rru_A0448: Rru_A0448 - Protein of unknown function DUF52 (NCBI), at 526,142 to 526,990 _A0448 Rru_A0449: Rru_A0449 - Radical SAM (NCBI), at 527,207 to 528,319 _A0449 Position (kb) 526 527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 525.454 kb on - strand, within Rru_A0447at 525.454 kb on - strand, within Rru_A0447at 525.454 kb on - strand, within Rru_A0447at 525.475 kb on + strand, within Rru_A0447at 525.475 kb on + strand, within Rru_A0447at 525.476 kb on - strand, within Rru_A0447at 525.481 kb on + strand, within Rru_A0447at 525.481 kb on + strand, within Rru_A0447at 525.481 kb on + strand, within Rru_A0447at 525.482 kb on - strand, within Rru_A0447at 525.482 kb on - strand, within Rru_A0447at 526.167 kb on + strandat 526.168 kb on - strandat 526.216 kb on + strandat 526.389 kb on + strand, within Rru_A0448at 526.389 kb on + strand, within Rru_A0448at 526.389 kb on + strand, within Rru_A0448at 526.390 kb on - strand, within Rru_A0448at 526.390 kb on - strand, within Rru_A0448at 526.665 kb on + strand, within Rru_A0448at 526.665 kb on + strand, within Rru_A0448at 526.666 kb on - strand, within Rru_A0448at 526.666 kb on - strand, within Rru_A0448at 526.797 kb on + strand, within Rru_A0448at 526.914 kb on + strandat 527.020 kb on + strandat 527.099 kb on - strandat 527.099 kb on - strandat 527.123 kb on + strandat 527.123 kb on + strandat 527.124 kb on - strandat 527.124 kb on - strandat 527.124 kb on - strandat 527.175 kb on + strandat 527.198 kb on + strandat 527.198 kb on + strandat 527.198 kb on + strandat 527.328 kb on + strand, within Rru_A0449at 527.328 kb on + strand, within Rru_A0449at 527.329 kb on - strand, within Rru_A0449at 527.329 kb on - strand, within Rru_A0449at 527.329 kb on - strand, within Rru_A0449at 527.348 kb on - strand, within Rru_A0449at 527.360 kb on - strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.613 kb on - strand, within Rru_A0449at 527.613 kb on - strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.615 kb on - strand, within Rru_A0449at 527.615 kb on - strand, within Rru_A0449at 527.705 kb on + strand, within Rru_A0449at 527.706 kb on - strand, within Rru_A0449at 527.706 kb on - strand, within Rru_A0449at 527.707 kb on + strand, within Rru_A0449at 527.708 kb on - strand, within Rru_A0449

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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525,454 - Rru_A0447 0.11 +0.0
525,454 - Rru_A0447 0.11 -1.0
525,454 - Rru_A0447 0.11 +0.3
525,475 + Rru_A0447 0.14 -0.1
525,475 + Rru_A0447 0.14 +0.0
525,476 - Rru_A0447 0.14 -0.6
525,481 + Rru_A0447 0.15 +0.0
525,481 + Rru_A0447 0.15 +0.4
525,481 + Rru_A0447 0.15 -0.2
525,482 - Rru_A0447 0.15 +0.0
525,482 - Rru_A0447 0.15 +0.0
526,167 + -0.2
526,168 - +0.4
526,216 + +0.5
526,389 + Rru_A0448 0.29 -0.3
526,389 + Rru_A0448 0.29 +0.1
526,389 + Rru_A0448 0.29 +0.3
526,390 - Rru_A0448 0.29 +0.0
526,390 - Rru_A0448 0.29 +0.0
526,665 + Rru_A0448 0.62 +0.5
526,665 + Rru_A0448 0.62 -2.1
526,666 - Rru_A0448 0.62 -0.3
526,666 - Rru_A0448 0.62 +0.0
526,797 + Rru_A0448 0.77 +0.0
526,914 + +0.0
527,020 + +0.0
527,099 - -1.0
527,099 - -2.0
527,123 + -0.3
527,123 + +0.0
527,124 - -0.8
527,124 - +0.0
527,124 - +0.2
527,175 + +0.0
527,198 + -1.1
527,198 + -0.3
527,198 + +0.4
527,328 + Rru_A0449 0.11 -0.2
527,328 + Rru_A0449 0.11 -3.0
527,329 - Rru_A0449 0.11 -1.1
527,329 - Rru_A0449 0.11 +0.0
527,329 - Rru_A0449 0.11 +0.0
527,348 - Rru_A0449 0.13 -0.4
527,360 - Rru_A0449 0.14 +0.0
527,612 + Rru_A0449 0.36 -0.6
527,612 + Rru_A0449 0.36 +0.0
527,612 + Rru_A0449 0.36 -0.3
527,612 + Rru_A0449 0.36 -1.0
527,612 + Rru_A0449 0.36 -1.0
527,613 - Rru_A0449 0.36 -0.6
527,613 - Rru_A0449 0.36 -0.6
527,614 + Rru_A0449 0.37 -0.2
527,614 + Rru_A0449 0.37 -0.9
527,614 + Rru_A0449 0.37 +0.0
527,614 + Rru_A0449 0.37 -0.6
527,614 + Rru_A0449 0.37 -0.7
527,615 - Rru_A0449 0.37 -0.7
527,615 - Rru_A0449 0.37 +2.3
527,705 + Rru_A0449 0.45 -0.6
527,706 - Rru_A0449 0.45 -0.9
527,706 - Rru_A0449 0.45 -1.6
527,707 + Rru_A0449 0.45 +0.0
527,708 - Rru_A0449 0.45 -1.6

Or see this region's nucleotide sequence