Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0013

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0296 and Rru_AR0012 are separated by 224 nucleotidesRru_AR0012 and Rru_AR0013 are separated by 202 nucleotidesRru_AR0013 and Rru_A0297 are separated by 43 nucleotides Rru_A0296: Rru_A0296 - hypothetical protein (NCBI), at 362,552 to 362,881 _A0296 Rru_AR0012: Rru_AR0012 - tRNA-Ala (NCBI), at 363,106 to 363,181 _AR0012 Rru_AR0013: Rru_AR0013 - tRNA-Ala (NCBI), at 363,384 to 363,459 _AR0013 Rru_A0297: Rru_A0297 - Putative esterase (NCBI), at 363,503 to 364,531 _A0297 Position (kb) 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1at 362.405 kb on + strandat 362.405 kb on + strandat 362.406 kb on - strandat 362.406 kb on - strandat 362.423 kb on + strandat 362.424 kb on - strandat 362.456 kb on + strandat 362.456 kb on + strandat 362.457 kb on - strandat 362.544 kb on + strandat 362.544 kb on + strandat 362.545 kb on - strandat 362.609 kb on + strand, within Rru_A0296at 362.610 kb on - strand, within Rru_A0296at 362.788 kb on + strand, within Rru_A0296at 362.788 kb on + strand, within Rru_A0296at 362.880 kb on - strandat 362.880 kb on - strandat 362.880 kb on - strandat 362.974 kb on - strandat 363.291 kb on + strandat 363.392 kb on - strand, within Rru_AR0013at 363.392 kb on - strand, within Rru_AR0013at 363.504 kb on + strandat 363.708 kb on + strand, within Rru_A0297at 363.708 kb on + strand, within Rru_A0297at 363.709 kb on - strand, within Rru_A0297at 363.763 kb on + strand, within Rru_A0297at 363.763 kb on + strand, within Rru_A0297at 363.763 kb on + strand, within Rru_A0297at 363.764 kb on - strand, within Rru_A0297at 363.764 kb on - strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.894 kb on - strand, within Rru_A0297at 363.898 kb on + strand, within Rru_A0297at 363.898 kb on + strand, within Rru_A0297at 363.899 kb on - strand, within Rru_A0297at 363.899 kb on - strand, within Rru_A0297at 363.939 kb on + strand, within Rru_A0297at 363.940 kb on - strand, within Rru_A0297at 364.041 kb on + strand, within Rru_A0297at 364.042 kb on - strand, within Rru_A0297at 364.042 kb on - strand, within Rru_A0297at 364.042 kb on - strand, within Rru_A0297at 364.138 kb on - strand, within Rru_A0297at 364.221 kb on + strand, within Rru_A0297at 364.221 kb on + strand, within Rru_A0297at 364.222 kb on - strand, within Rru_A0297at 364.359 kb on + strand, within Rru_A0297at 364.359 kb on + strand, within Rru_A0297at 364.359 kb on + strand, within Rru_A0297at 364.360 kb on - strand, within Rru_A0297at 364.360 kb on - strand, within Rru_A0297at 364.360 kb on - strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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362,405 + +0.0
362,405 + +0.0
362,406 - -0.7
362,406 - +0.0
362,423 + +0.0
362,424 - +0.0
362,456 + +0.3
362,456 + +0.0
362,457 - +0.0
362,544 + +0.0
362,544 + +0.0
362,545 - +0.0
362,609 + Rru_A0296 0.17 -1.0
362,610 - Rru_A0296 0.18 -1.0
362,788 + Rru_A0296 0.72 +0.0
362,788 + Rru_A0296 0.72 +0.0
362,880 - -1.7
362,880 - +0.0
362,880 - -1.0
362,974 - +0.0
363,291 + -0.1
363,392 - Rru_AR0013 0.11 -0.6
363,392 - Rru_AR0013 0.11 -1.7
363,504 + +0.0
363,708 + Rru_A0297 0.20 +0.0
363,708 + Rru_A0297 0.20 -0.9
363,709 - Rru_A0297 0.20 +0.0
363,763 + Rru_A0297 0.25 +0.8
363,763 + Rru_A0297 0.25 +0.0
363,763 + Rru_A0297 0.25 +1.0
363,764 - Rru_A0297 0.25 +0.0
363,764 - Rru_A0297 0.25 -0.1
363,765 + Rru_A0297 0.25 -1.1
363,765 + Rru_A0297 0.25 -1.0
363,765 + Rru_A0297 0.25 -1.8
363,765 + Rru_A0297 0.25 +0.0
363,765 + Rru_A0297 0.25 -0.5
363,765 + Rru_A0297 0.25 +0.0
363,765 + Rru_A0297 0.25 +0.4
363,765 + Rru_A0297 0.25 +0.0
363,766 - Rru_A0297 0.26 +1.0
363,766 - Rru_A0297 0.26 -0.1
363,766 - Rru_A0297 0.26 +0.2
363,766 - Rru_A0297 0.26 +1.2
363,766 - Rru_A0297 0.26 -0.3
363,766 - Rru_A0297 0.26 -0.7
363,766 - Rru_A0297 0.26 -0.8
363,766 - Rru_A0297 0.26 +0.0
363,766 - Rru_A0297 0.26 -1.1
363,766 - Rru_A0297 0.26 -3.7
363,894 - Rru_A0297 0.38 -1.8
363,898 + Rru_A0297 0.38 -0.7
363,898 + Rru_A0297 0.38 -1.0
363,899 - Rru_A0297 0.38 +0.0
363,899 - Rru_A0297 0.38 -0.8
363,939 + Rru_A0297 0.42 -0.2
363,940 - Rru_A0297 0.42 -0.4
364,041 + Rru_A0297 0.52 -1.0
364,042 - Rru_A0297 0.52 +0.3
364,042 - Rru_A0297 0.52 -1.0
364,042 - Rru_A0297 0.52 -0.9
364,138 - Rru_A0297 0.62 +1.0
364,221 + Rru_A0297 0.70 -0.9
364,221 + Rru_A0297 0.70 +0.0
364,222 - Rru_A0297 0.70 -1.1
364,359 + Rru_A0297 0.83 +0.0
364,359 + Rru_A0297 0.83 -0.1
364,359 + Rru_A0297 0.83 +0.0
364,360 - Rru_A0297 0.83 -0.3
364,360 - Rru_A0297 0.83 -2.1
364,360 - Rru_A0297 0.83 -1.5
364,404 + Rru_A0297 0.88 +0.2
364,404 + Rru_A0297 0.88 +0.0
364,404 + Rru_A0297 0.88 -1.1
364,404 + Rru_A0297 0.88 +0.0
364,404 + Rru_A0297 0.88 +0.0
364,405 - Rru_A0297 0.88 +0.0
364,405 - Rru_A0297 0.88 +0.0
364,405 - Rru_A0297 0.88 -0.4
364,405 - Rru_A0297 0.88 +0.0
364,405 - Rru_A0297 0.88 +0.0

Or see this region's nucleotide sequence