Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0295

Experiment: acetate; Light intensity 75 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0294 and Rru_A0295 are separated by 82 nucleotidesRru_A0295 and Rru_A0296 are separated by 298 nucleotidesRru_A0296 and Rru_AR0012 are separated by 224 nucleotides Rru_A0294: Rru_A0294 - Cytidylate kinase (NCBI), at 360,174 to 360,815 _A0294 Rru_A0295: Rru_A0295 - 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI), at 360,898 to 362,253 _A0295 Rru_A0296: Rru_A0296 - hypothetical protein (NCBI), at 362,552 to 362,881 _A0296 Rru_AR0012: Rru_AR0012 - tRNA-Ala (NCBI), at 363,106 to 363,181 _AR0012 Position (kb) 360 361 362 363Strain fitness (log2 ratio) -1 0 1 2at 360.125 kb on - strandat 360.125 kb on - strandat 360.125 kb on - strandat 360.719 kb on + strand, within Rru_A0294at 360.810 kb on - strandat 362.405 kb on + strandat 362.405 kb on + strandat 362.406 kb on - strandat 362.406 kb on - strandat 362.423 kb on + strandat 362.424 kb on - strandat 362.456 kb on + strandat 362.456 kb on + strandat 362.457 kb on - strandat 362.544 kb on + strandat 362.544 kb on + strandat 362.545 kb on - strandat 362.609 kb on + strand, within Rru_A0296at 362.610 kb on - strand, within Rru_A0296at 362.788 kb on + strand, within Rru_A0296at 362.788 kb on + strand, within Rru_A0296at 362.880 kb on - strandat 362.880 kb on - strandat 362.880 kb on - strandat 362.974 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
remove
360,125 - +0.0
360,125 - +2.0
360,125 - +0.0
360,719 + Rru_A0294 0.85 -0.8
360,810 - -1.0
362,405 + +0.0
362,405 + +0.0
362,406 - -0.7
362,406 - +0.0
362,423 + +0.0
362,424 - +0.0
362,456 + +0.3
362,456 + +0.0
362,457 - +0.0
362,544 + +0.0
362,544 + +0.0
362,545 - +0.0
362,609 + Rru_A0296 0.17 -1.0
362,610 - Rru_A0296 0.18 -1.0
362,788 + Rru_A0296 0.72 +0.0
362,788 + Rru_A0296 0.72 +0.0
362,880 - -1.7
362,880 - +0.0
362,880 - -1.0
362,974 - +0.0

Or see this region's nucleotide sequence