Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0272 and Rru_A0273 are separated by 69 nucleotides Rru_A0273 and Rru_A0274 are separated by 183 nucleotides Rru_A0274 and Rru_A0275 are separated by 200 nucleotides
Rru_A0272: Rru_A0272 - Small multidrug resistance protein (NCBI), at 337,010 to 337,321
_A0272
Rru_A0273: Rru_A0273 - Acetoacetyl-CoA reductase (NCBI), at 337,391 to 338,119
_A0273
Rru_A0274: Rru_A0274 - Acetyl-CoA C-acetyltransferase (NCBI), at 338,303 to 339,475
_A0274
Rru_A0275: Rru_A0275 - Alpha/beta hydrolase fold (NCBI), at 339,676 to 340,920
_A0275
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 337.392 kb on + strand at 337.392 kb on + strand at 337.393 kb on - strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.395 kb on + strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.396 kb on - strand at 337.440 kb on + strand at 337.440 kb on + strand at 337.440 kb on + strand at 337.440 kb on + strand at 337.441 kb on - strand at 337.441 kb on - strand at 337.545 kb on + strand, within Rru_A0273 at 337.579 kb on - strand, within Rru_A0273 at 337.674 kb on + strand, within Rru_A0273 at 337.689 kb on + strand, within Rru_A0273 at 337.690 kb on - strand, within Rru_A0273 at 337.807 kb on + strand, within Rru_A0273 at 337.807 kb on + strand, within Rru_A0273 at 337.938 kb on + strand, within Rru_A0273 at 337.939 kb on - strand, within Rru_A0273 at 337.939 kb on - strand, within Rru_A0273 at 338.013 kb on + strand, within Rru_A0273 at 338.016 kb on + strand, within Rru_A0273 at 338.016 kb on + strand, within Rru_A0273 at 338.017 kb on - strand, within Rru_A0273 at 338.017 kb on - strand, within Rru_A0273 at 338.017 kb on - strand, within Rru_A0273 at 338.145 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.214 kb on + strand at 338.215 kb on - strand at 338.215 kb on - strand at 338.305 kb on - strand at 339.099 kb on + strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.231 kb on + strand, within Rru_A0274 at 339.413 kb on + strand at 339.414 kb on - strand at 339.424 kb on + strand at 339.443 kb on - strand at 339.443 kb on - strand at 339.720 kb on - strand at 339.944 kb on + strand, within Rru_A0275 at 340.158 kb on + strand, within Rru_A0275 at 340.307 kb on + strand, within Rru_A0275 at 340.383 kb on - strand, within Rru_A0275 at 340.383 kb on - strand, within Rru_A0275
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 337,392 + +0.0 337,392 + -3.7 337,393 - +0.0 337,395 + +0.0 337,395 + +0.0 337,395 + +0.0 337,395 + -1.0 337,395 + -2.6 337,395 + -3.0 337,395 + +0.0 337,396 - -2.5 337,396 - -1.3 337,396 - -1.6 337,396 - -1.0 337,396 - -1.0 337,396 - -2.4 337,440 + +0.0 337,440 + -2.6 337,440 + +0.0 337,440 + -2.0 337,441 - -1.8 337,441 - -2.5 337,545 + Rru_A0273 0.21 -1.0 337,579 - Rru_A0273 0.26 -3.7 337,674 + Rru_A0273 0.39 +0.0 337,689 + Rru_A0273 0.41 -1.8 337,690 - Rru_A0273 0.41 +0.0 337,807 + Rru_A0273 0.57 -2.5 337,807 + Rru_A0273 0.57 +0.0 337,938 + Rru_A0273 0.75 -1.3 337,939 - Rru_A0273 0.75 -2.4 337,939 - Rru_A0273 0.75 +0.0 338,013 + Rru_A0273 0.85 +0.0 338,016 + Rru_A0273 0.86 -1.6 338,016 + Rru_A0273 0.86 -2.2 338,017 - Rru_A0273 0.86 +0.0 338,017 - Rru_A0273 0.86 -2.5 338,017 - Rru_A0273 0.86 +0.0 338,145 + -2.4 338,214 + +0.0 338,214 + -1.3 338,214 + +0.0 338,214 + -2.0 338,214 + -2.2 338,215 - +0.4 338,215 - +0.7 338,305 - +0.0 339,099 + Rru_A0274 0.68 -1.0 339,100 - Rru_A0274 0.68 +0.0 339,100 - Rru_A0274 0.68 +0.0 339,100 - Rru_A0274 0.68 -2.0 339,100 - Rru_A0274 0.68 +0.4 339,231 + Rru_A0274 0.79 -3.0 339,413 + +0.0 339,414 - -2.6 339,424 + -2.0 339,443 - -2.6 339,443 - -2.6 339,720 - +0.0 339,944 + Rru_A0275 0.22 -1.6 340,158 + Rru_A0275 0.39 +0.0 340,307 + Rru_A0275 0.51 -1.3 340,383 - Rru_A0275 0.57 +0.0 340,383 - Rru_A0275 0.57 +1.0
Or see this region's nucleotide sequence