Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0224

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0223 and Rru_A0224 are separated by 17 nucleotidesRru_A0224 and Rru_A0225 overlap by 4 nucleotidesRru_A0225 and Rru_A0226 are separated by 23 nucleotides Rru_A0223: Rru_A0223 - Protein of unknown function DUF344 (NCBI), at 274,999 to 276,603 _A0223 Rru_A0224: Rru_A0224 - Protein of unknown function DUF160 (NCBI), at 276,621 to 277,595 _A0224 Rru_A0225: Rru_A0225 - Metal dependent phosphohydrolase, HD region (NCBI), at 277,592 to 278,266 _A0225 Rru_A0226: Rru_A0226 - Major facilitator superfamily MFS_1 (NCBI), at 278,290 to 279,630 _A0226 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1at 275.622 kb on + strand, within Rru_A0223at 275.622 kb on + strand, within Rru_A0223at 275.622 kb on + strand, within Rru_A0223at 275.623 kb on - strand, within Rru_A0223at 275.623 kb on - strand, within Rru_A0223at 275.647 kb on + strand, within Rru_A0223at 275.647 kb on + strand, within Rru_A0223at 275.648 kb on - strand, within Rru_A0223at 275.880 kb on + strand, within Rru_A0223at 275.881 kb on - strand, within Rru_A0223at 275.881 kb on - strand, within Rru_A0223at 275.881 kb on - strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.909 kb on - strand, within Rru_A0223at 275.909 kb on - strand, within Rru_A0223at 276.118 kb on + strand, within Rru_A0223at 276.118 kb on + strand, within Rru_A0223at 276.119 kb on - strand, within Rru_A0223at 276.119 kb on - strand, within Rru_A0223at 276.142 kb on - strand, within Rru_A0223at 276.217 kb on + strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.247 kb on + strand, within Rru_A0223at 276.248 kb on - strand, within Rru_A0223at 276.249 kb on + strand, within Rru_A0223at 276.386 kb on + strand, within Rru_A0223at 276.387 kb on - strand, within Rru_A0223at 276.427 kb on + strand, within Rru_A0223at 276.428 kb on - strand, within Rru_A0223at 276.428 kb on - strand, within Rru_A0223at 276.474 kb on - strandat 276.474 kb on - strandat 276.601 kb on + strandat 276.602 kb on - strandat 276.602 kb on - strandat 276.622 kb on + strandat 276.679 kb on + strandat 276.680 kb on - strandat 276.797 kb on - strand, within Rru_A0224at 276.799 kb on + strand, within Rru_A0224at 277.192 kb on + strand, within Rru_A0224at 277.193 kb on - strand, within Rru_A0224at 277.276 kb on + strand, within Rru_A0224at 277.495 kb on + strand, within Rru_A0224at 277.496 kb on - strand, within Rru_A0224at 277.936 kb on - strand, within Rru_A0225at 277.936 kb on - strand, within Rru_A0225at 277.936 kb on - strand, within Rru_A0225at 278.481 kb on + strand, within Rru_A0226at 278.482 kb on - strand, within Rru_A0226at 278.482 kb on - strand, within Rru_A0226at 278.482 kb on - strand, within Rru_A0226at 278.482 kb on - strand, within Rru_A0226at 278.484 kb on - strand, within Rru_A0226at 278.592 kb on + strand, within Rru_A0226at 278.594 kb on + strand, within Rru_A0226at 278.595 kb on - strand, within Rru_A0226

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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275,622 + Rru_A0223 0.39 -0.8
275,622 + Rru_A0223 0.39 -0.5
275,622 + Rru_A0223 0.39 -0.7
275,623 - Rru_A0223 0.39 -0.6
275,623 - Rru_A0223 0.39 -1.3
275,647 + Rru_A0223 0.40 -0.4
275,647 + Rru_A0223 0.40 -0.8
275,648 - Rru_A0223 0.40 +0.0
275,880 + Rru_A0223 0.55 -1.8
275,881 - Rru_A0223 0.55 -1.2
275,881 - Rru_A0223 0.55 +0.0
275,881 - Rru_A0223 0.55 +0.0
275,908 + Rru_A0223 0.57 -0.7
275,908 + Rru_A0223 0.57 +0.0
275,908 + Rru_A0223 0.57 -2.6
275,908 + Rru_A0223 0.57 +0.3
275,909 - Rru_A0223 0.57 -0.5
275,909 - Rru_A0223 0.57 -0.5
276,118 + Rru_A0223 0.70 -1.1
276,118 + Rru_A0223 0.70 +0.0
276,119 - Rru_A0223 0.70 -0.4
276,119 - Rru_A0223 0.70 -0.5
276,142 - Rru_A0223 0.71 +0.0
276,217 + Rru_A0223 0.76 -0.3
276,218 - Rru_A0223 0.76 -0.6
276,218 - Rru_A0223 0.76 +0.6
276,218 - Rru_A0223 0.76 -0.3
276,218 - Rru_A0223 0.76 -1.2
276,247 + Rru_A0223 0.78 +0.0
276,248 - Rru_A0223 0.78 -0.7
276,249 + Rru_A0223 0.78 -1.5
276,386 + Rru_A0223 0.86 -0.9
276,387 - Rru_A0223 0.86 +0.0
276,427 + Rru_A0223 0.89 -0.4
276,428 - Rru_A0223 0.89 -0.6
276,428 - Rru_A0223 0.89 +0.0
276,474 - +0.0
276,474 - +0.2
276,601 + +0.0
276,602 - -0.6
276,602 - +0.0
276,622 + +0.0
276,679 + +0.0
276,680 - +0.0
276,797 - Rru_A0224 0.18 +0.0
276,799 + Rru_A0224 0.18 +0.0
277,192 + Rru_A0224 0.59 +0.0
277,193 - Rru_A0224 0.59 +0.0
277,276 + Rru_A0224 0.67 +0.0
277,495 + Rru_A0224 0.90 +0.0
277,496 - Rru_A0224 0.90 +0.0
277,936 - Rru_A0225 0.51 +0.0
277,936 - Rru_A0225 0.51 +0.0
277,936 - Rru_A0225 0.51 -0.4
278,481 + Rru_A0226 0.14 +0.0
278,482 - Rru_A0226 0.14 +0.0
278,482 - Rru_A0226 0.14 +0.0
278,482 - Rru_A0226 0.14 -0.6
278,482 - Rru_A0226 0.14 +0.0
278,484 - Rru_A0226 0.14 -0.3
278,592 + Rru_A0226 0.23 +0.0
278,594 + Rru_A0226 0.23 +0.0
278,595 - Rru_A0226 0.23 -3.0

Or see this region's nucleotide sequence