Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0188

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0187 and Rru_A0188 are separated by 493 nucleotidesRru_A0188 and Rru_A0189 overlap by 4 nucleotides Rru_A0187: Rru_A0187 - hypothetical protein (NCBI), at 226,301 to 226,591 _A0187 Rru_A0188: Rru_A0188 - ABC transporter, transmembrane region (NCBI), at 227,085 to 228,815 _A0188 Rru_A0189: Rru_A0189 - ABC transporter, transmembrane region (NCBI), at 228,812 to 230,593 _A0189 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1at 226.105 kb on + strandat 226.106 kb on - strandat 226.143 kb on - strandat 226.165 kb on - strandat 226.176 kb on - strandat 226.256 kb on + strandat 226.399 kb on - strand, within Rru_A0187at 226.413 kb on - strand, within Rru_A0187at 226.413 kb on - strand, within Rru_A0187at 226.413 kb on - strand, within Rru_A0187at 226.534 kb on + strand, within Rru_A0187at 226.589 kb on + strandat 226.594 kb on - strandat 226.676 kb on + strandat 226.676 kb on + strandat 226.677 kb on - strandat 226.677 kb on - strandat 226.681 kb on + strandat 226.681 kb on + strandat 226.681 kb on + strandat 227.019 kb on + strandat 227.019 kb on + strandat 227.030 kb on - strandat 227.032 kb on - strandat 227.064 kb on + strandat 227.065 kb on - strandat 227.126 kb on - strandat 227.212 kb on - strandat 227.908 kb on + strand, within Rru_A0188at 227.908 kb on + strand, within Rru_A0188at 227.908 kb on + strand, within Rru_A0188at 227.908 kb on + strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.909 kb on - strand, within Rru_A0188at 227.953 kb on + strand, within Rru_A0188at 227.954 kb on - strand, within Rru_A0188at 227.954 kb on - strand, within Rru_A0188at 227.954 kb on - strand, within Rru_A0188at 227.987 kb on - strand, within Rru_A0188at 228.209 kb on - strand, within Rru_A0188at 228.209 kb on - strand, within Rru_A0188at 228.476 kb on + strand, within Rru_A0188at 228.476 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.551 kb on + strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.552 kb on - strand, within Rru_A0188at 228.697 kb on + strandat 228.697 kb on + strandat 228.697 kb on + strandat 228.697 kb on + strandat 228.904 kb on - strandat 229.231 kb on - strand, within Rru_A0189at 229.325 kb on + strand, within Rru_A0189at 229.325 kb on + strand, within Rru_A0189at 229.407 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.774 kb on + strand, within Rru_A0189at 229.775 kb on - strand, within Rru_A0189

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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226,105 + +0.3
226,106 - +0.0
226,143 - -0.3
226,165 - -1.2
226,176 - +0.0
226,256 + -0.3
226,399 - Rru_A0187 0.34 -1.0
226,413 - Rru_A0187 0.38 +0.0
226,413 - Rru_A0187 0.38 -0.6
226,413 - Rru_A0187 0.38 -1.1
226,534 + Rru_A0187 0.80 -1.1
226,589 + -1.3
226,594 - -1.0
226,676 + -1.8
226,676 + -0.4
226,677 - +0.2
226,677 - +0.0
226,681 + -0.9
226,681 + -1.3
226,681 + +0.0
227,019 + -0.7
227,019 + -0.6
227,030 - +0.0
227,032 - +0.0
227,064 + -0.7
227,065 - +0.0
227,126 - +0.4
227,212 - -1.2
227,908 + Rru_A0188 0.48 -0.7
227,908 + Rru_A0188 0.48 -0.3
227,908 + Rru_A0188 0.48 -1.1
227,908 + Rru_A0188 0.48 +0.0
227,909 - Rru_A0188 0.48 +1.3
227,909 - Rru_A0188 0.48 -1.2
227,909 - Rru_A0188 0.48 -0.5
227,909 - Rru_A0188 0.48 +0.0
227,909 - Rru_A0188 0.48 -0.7
227,909 - Rru_A0188 0.48 -0.5
227,909 - Rru_A0188 0.48 -1.1
227,953 + Rru_A0188 0.50 -0.7
227,954 - Rru_A0188 0.50 -2.2
227,954 - Rru_A0188 0.50 -0.5
227,954 - Rru_A0188 0.50 +0.0
227,987 - Rru_A0188 0.52 -3.2
228,209 - Rru_A0188 0.65 +0.0
228,209 - Rru_A0188 0.65 -2.3
228,476 + Rru_A0188 0.80 -0.7
228,476 + Rru_A0188 0.80 -0.4
228,551 + Rru_A0188 0.85 -0.6
228,551 + Rru_A0188 0.85 -1.0
228,551 + Rru_A0188 0.85 -0.6
228,551 + Rru_A0188 0.85 +0.0
228,552 - Rru_A0188 0.85 -1.5
228,552 - Rru_A0188 0.85 -2.0
228,552 - Rru_A0188 0.85 +0.0
228,552 - Rru_A0188 0.85 -1.3
228,697 + -0.4
228,697 + -1.4
228,697 + +0.0
228,697 + +0.0
228,904 - +0.0
229,231 - Rru_A0189 0.24 -1.1
229,325 + Rru_A0189 0.29 -1.3
229,325 + Rru_A0189 0.29 +0.0
229,407 + Rru_A0189 0.33 -0.9
229,774 + Rru_A0189 0.54 +0.0
229,774 + Rru_A0189 0.54 -0.8
229,774 + Rru_A0189 0.54 +0.0
229,774 + Rru_A0189 0.54 -0.7
229,774 + Rru_A0189 0.54 -1.0
229,774 + Rru_A0189 0.54 -0.8
229,774 + Rru_A0189 0.54 -0.3
229,775 - Rru_A0189 0.54 +0.0

Or see this region's nucleotide sequence