Experiment: acetate; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0068 and Rru_A0069 overlap by 4 nucleotides Rru_A0069 and Rru_A0070 are separated by 363 nucleotides
Rru_A0068: Rru_A0068 - Alpha/beta hydrolase fold (NCBI), at 78,818 to 79,945
_A0068
Rru_A0069: Rru_A0069 - ABC transporter component (NCBI), at 79,942 to 80,952
_A0069
Rru_A0070: Rru_A0070 - Protein of unknown function DUF6, transmembrane (NCBI), at 81,316 to 82,311
_A0070
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 79.006 kb on + strand, within Rru_A0068 at 79.158 kb on + strand, within Rru_A0068 at 79.158 kb on + strand, within Rru_A0068 at 79.200 kb on + strand, within Rru_A0068 at 79.200 kb on + strand, within Rru_A0068 at 79.200 kb on + strand, within Rru_A0068 at 79.200 kb on + strand, within Rru_A0068 at 79.201 kb on - strand, within Rru_A0068 at 79.284 kb on + strand, within Rru_A0068 at 79.285 kb on - strand, within Rru_A0068 at 79.285 kb on - strand, within Rru_A0068 at 79.311 kb on + strand, within Rru_A0068 at 79.383 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.518 kb on + strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.519 kb on - strand, within Rru_A0068 at 79.641 kb on + strand, within Rru_A0068 at 79.641 kb on + strand, within Rru_A0068 at 79.642 kb on - strand, within Rru_A0068 at 80.093 kb on + strand, within Rru_A0069 at 80.093 kb on + strand, within Rru_A0069 at 80.093 kb on + strand, within Rru_A0069 at 80.093 kb on + strand, within Rru_A0069 at 80.093 kb on + strand, within Rru_A0069 at 80.093 kb on + strand, within Rru_A0069 at 80.094 kb on - strand, within Rru_A0069 at 80.094 kb on - strand, within Rru_A0069 at 80.111 kb on + strand, within Rru_A0069 at 80.112 kb on - strand, within Rru_A0069 at 80.112 kb on - strand, within Rru_A0069 at 80.112 kb on - strand, within Rru_A0069 at 80.301 kb on - strand, within Rru_A0069 at 80.301 kb on - strand, within Rru_A0069 at 80.351 kb on + strand, within Rru_A0069 at 80.352 kb on - strand, within Rru_A0069 at 80.352 kb on - strand, within Rru_A0069 at 80.352 kb on - strand, within Rru_A0069 at 80.352 kb on - strand, within Rru_A0069 at 80.486 kb on + strand, within Rru_A0069 at 80.487 kb on - strand, within Rru_A0069 at 80.561 kb on + strand, within Rru_A0069 at 80.561 kb on + strand, within Rru_A0069 at 80.561 kb on + strand, within Rru_A0069 at 80.561 kb on + strand, within Rru_A0069 at 80.561 kb on + strand, within Rru_A0069 at 80.562 kb on - strand, within Rru_A0069 at 80.562 kb on - strand, within Rru_A0069 at 80.562 kb on - strand, within Rru_A0069 at 80.562 kb on - strand, within Rru_A0069 at 80.562 kb on - strand, within Rru_A0069 at 80.562 kb on - strand, within Rru_A0069 at 80.837 kb on + strand, within Rru_A0069 at 81.004 kb on + strand at 81.005 kb on - strand at 81.032 kb on - strand at 81.066 kb on + strand at 81.214 kb on + strand at 81.214 kb on + strand at 81.218 kb on + strand at 81.218 kb on + strand at 81.218 kb on + strand at 81.219 kb on - strand at 81.219 kb on - strand at 81.219 kb on - strand at 81.260 kb on + strand at 81.261 kb on - strand at 81.275 kb on + strand at 81.275 kb on + strand at 81.276 kb on - strand at 81.276 kb on - strand at 81.276 kb on - strand at 81.317 kb on + strand at 81.380 kb on + strand at 81.380 kb on + strand at 81.381 kb on - strand at 81.381 kb on - strand at 81.381 kb on - strand at 81.381 kb on - strand at 81.381 kb on - strand at 81.479 kb on + strand, within Rru_A0070 at 81.479 kb on + strand, within Rru_A0070 at 81.479 kb on + strand, within Rru_A0070 at 81.480 kb on - strand, within Rru_A0070 at 81.480 kb on - strand, within Rru_A0070 at 81.480 kb on - strand, within Rru_A0070 at 81.480 kb on - strand, within Rru_A0070 at 81.486 kb on - strand, within Rru_A0070 at 81.486 kb on - strand, within Rru_A0070 at 81.486 kb on - strand, within Rru_A0070 at 81.729 kb on - strand, within Rru_A0070 at 81.729 kb on - strand, within Rru_A0070 at 81.729 kb on - strand, within Rru_A0070 at 81.761 kb on + strand, within Rru_A0070 at 81.762 kb on - strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM remove 79,006 + Rru_A0068 0.17 -1.4 79,158 + Rru_A0068 0.30 -0.4 79,158 + Rru_A0068 0.30 -1.0 79,200 + Rru_A0068 0.34 +0.1 79,200 + Rru_A0068 0.34 -0.8 79,200 + Rru_A0068 0.34 +0.2 79,200 + Rru_A0068 0.34 +0.0 79,201 - Rru_A0068 0.34 -0.5 79,284 + Rru_A0068 0.41 -0.6 79,285 - Rru_A0068 0.41 -2.4 79,285 - Rru_A0068 0.41 -0.3 79,311 + Rru_A0068 0.44 -0.4 79,383 + Rru_A0068 0.50 -0.9 79,518 + Rru_A0068 0.62 -1.3 79,518 + Rru_A0068 0.62 +0.0 79,518 + Rru_A0068 0.62 -1.4 79,518 + Rru_A0068 0.62 -0.9 79,518 + Rru_A0068 0.62 +0.6 79,518 + Rru_A0068 0.62 -0.4 79,518 + Rru_A0068 0.62 +0.0 79,518 + Rru_A0068 0.62 +0.0 79,518 + Rru_A0068 0.62 +0.0 79,519 - Rru_A0068 0.62 -1.0 79,519 - Rru_A0068 0.62 -0.7 79,519 - Rru_A0068 0.62 -0.6 79,519 - Rru_A0068 0.62 -1.0 79,519 - Rru_A0068 0.62 -1.6 79,519 - Rru_A0068 0.62 -1.1 79,519 - Rru_A0068 0.62 -0.7 79,641 + Rru_A0068 0.73 +0.0 79,641 + Rru_A0068 0.73 -0.9 79,642 - Rru_A0068 0.73 +0.0 80,093 + Rru_A0069 0.15 +0.0 80,093 + Rru_A0069 0.15 +0.0 80,093 + Rru_A0069 0.15 -0.8 80,093 + Rru_A0069 0.15 -0.6 80,093 + Rru_A0069 0.15 +0.0 80,093 + Rru_A0069 0.15 +0.0 80,094 - Rru_A0069 0.15 +0.1 80,094 - Rru_A0069 0.15 -0.4 80,111 + Rru_A0069 0.17 +0.3 80,112 - Rru_A0069 0.17 -0.5 80,112 - Rru_A0069 0.17 +0.0 80,112 - Rru_A0069 0.17 -0.8 80,301 - Rru_A0069 0.36 -0.4 80,301 - Rru_A0069 0.36 -0.2 80,351 + Rru_A0069 0.40 +0.0 80,352 - Rru_A0069 0.41 -0.7 80,352 - Rru_A0069 0.41 +0.3 80,352 - Rru_A0069 0.41 -1.4 80,352 - Rru_A0069 0.41 +0.0 80,486 + Rru_A0069 0.54 +0.0 80,487 - Rru_A0069 0.54 +0.0 80,561 + Rru_A0069 0.61 -1.0 80,561 + Rru_A0069 0.61 -0.3 80,561 + Rru_A0069 0.61 +0.2 80,561 + Rru_A0069 0.61 -0.4 80,561 + Rru_A0069 0.61 -0.7 80,562 - Rru_A0069 0.61 +0.0 80,562 - Rru_A0069 0.61 +0.0 80,562 - Rru_A0069 0.61 +1.6 80,562 - Rru_A0069 0.61 -0.9 80,562 - Rru_A0069 0.61 -1.0 80,562 - Rru_A0069 0.61 +0.0 80,837 + Rru_A0069 0.89 -1.0 81,004 + +0.0 81,005 - +0.3 81,032 - +0.0 81,066 + +0.0 81,214 + -1.3 81,214 + -1.7 81,218 + +0.5 81,218 + -1.0 81,218 + +1.2 81,219 - +0.0 81,219 - -2.6 81,219 - -1.0 81,260 + +0.0 81,261 - +0.0 81,275 + -1.5 81,275 + -0.7 81,276 - -1.0 81,276 - -0.2 81,276 - +0.0 81,317 + +0.0 81,380 + -0.6 81,380 + +0.0 81,381 - +0.6 81,381 - -1.0 81,381 - -0.8 81,381 - -0.6 81,381 - -1.6 81,479 + Rru_A0070 0.16 -0.5 81,479 + Rru_A0070 0.16 +0.0 81,479 + Rru_A0070 0.16 +0.0 81,480 - Rru_A0070 0.16 +0.0 81,480 - Rru_A0070 0.16 -0.8 81,480 - Rru_A0070 0.16 +0.0 81,480 - Rru_A0070 0.16 +0.2 81,486 - Rru_A0070 0.17 +0.1 81,486 - Rru_A0070 0.17 -1.0 81,486 - Rru_A0070 0.17 +0.3 81,729 - Rru_A0070 0.41 -1.3 81,729 - Rru_A0070 0.41 -1.1 81,729 - Rru_A0070 0.41 +0.0 81,761 + Rru_A0070 0.45 +0.0 81,762 - Rru_A0070 0.45 +0.0 81,877 + Rru_A0070 0.56 +0.3 81,877 + Rru_A0070 0.56 +0.0 81,877 + Rru_A0070 0.56 +0.6 81,877 + Rru_A0070 0.56 -0.1
Or see this region's nucleotide sequence