Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0023

Experiment: acetate; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0022 and Rru_A0023 are separated by 170 nucleotidesRru_A0023 and Rru_A0024 are separated by 124 nucleotides Rru_A0022: Rru_A0022 - Glutathione S-transferase-like (NCBI), at 27,098 to 27,766 _A0022 Rru_A0023: Rru_A0023 - hypothetical protein (NCBI), at 27,937 to 28,329 _A0023 Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599 _A0024 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 27.022 kb on + strandat 27.023 kb on - strandat 27.023 kb on - strandat 27.764 kb on + strandat 27.765 kb on - strandat 27.765 kb on - strandat 27.843 kb on - strandat 28.048 kb on - strand, within Rru_A0023at 28.048 kb on - strand, within Rru_A0023at 28.430 kb on + strandat 28.430 kb on + strandat 28.431 kb on - strandat 28.867 kb on + strand, within Rru_A0024at 28.867 kb on + strand, within Rru_A0024at 28.867 kb on + strand, within Rru_A0024at 29.111 kb on + strand, within Rru_A0024at 29.111 kb on + strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 75 uM
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27,022 + +0.3
27,023 - -0.1
27,023 - -0.6
27,764 + +0.0
27,765 - -1.5
27,765 - -0.2
27,843 - -2.6
28,048 - Rru_A0023 0.28 -1.6
28,048 - Rru_A0023 0.28 -1.3
28,430 + +0.0
28,430 + +0.0
28,431 - -1.3
28,867 + Rru_A0024 0.36 -1.6
28,867 + Rru_A0024 0.36 +0.0
28,867 + Rru_A0024 0.36 +0.0
29,111 + Rru_A0024 0.57 +0.0
29,111 + Rru_A0024 0.57 +0.0
29,264 - Rru_A0024 0.71 -0.8
29,264 - Rru_A0024 0.71 +1.3
29,264 - Rru_A0024 0.71 -1.8

Or see this region's nucleotide sequence