Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20900 and RS_RS20905 are separated by 203 nucleotides RS_RS20905 and RS_RS20910 are separated by 105 nucleotides
RS_RS20900: RS_RS20900 - acyl-CoA desaturase, at 996,701 to 997,606
_RS20900
RS_RS20905: RS_RS20905 - hypothetical protein, at 997,810 to 998,031
_RS20905
RS_RS20910: RS_RS20910 - pyridoxal phosphate-dependent aminotransferase, at 998,137 to 999,324
_RS20910
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 996.875 kb on + strand, within RS_RS20900 at 996.875 kb on + strand, within RS_RS20900 at 996.875 kb on + strand, within RS_RS20900 at 996.875 kb on + strand, within RS_RS20900 at 996.875 kb on + strand, within RS_RS20900 at 996.876 kb on - strand, within RS_RS20900 at 997.048 kb on + strand, within RS_RS20900 at 997.067 kb on - strand, within RS_RS20900 at 997.067 kb on - strand, within RS_RS20900 at 997.124 kb on + strand, within RS_RS20900 at 997.144 kb on + strand, within RS_RS20900 at 997.179 kb on - strand, within RS_RS20900 at 997.179 kb on - strand, within RS_RS20900 at 997.193 kb on + strand, within RS_RS20900 at 997.824 kb on + strand at 997.824 kb on + strand at 997.824 kb on + strand at 997.824 kb on + strand at 997.824 kb on + strand at 997.879 kb on + strand, within RS_RS20905 at 997.879 kb on + strand, within RS_RS20905 at 997.880 kb on - strand, within RS_RS20905 at 997.880 kb on - strand, within RS_RS20905 at 997.960 kb on + strand, within RS_RS20905 at 997.960 kb on + strand, within RS_RS20905 at 997.960 kb on + strand, within RS_RS20905 at 997.960 kb on + strand, within RS_RS20905 at 997.961 kb on - strand, within RS_RS20905 at 997.961 kb on - strand, within RS_RS20905 at 997.967 kb on - strand, within RS_RS20905 at 997.975 kb on + strand, within RS_RS20905 at 997.975 kb on + strand, within RS_RS20905 at 997.976 kb on - strand, within RS_RS20905 at 998.138 kb on + strand at 998.139 kb on - strand at 998.201 kb on + strand at 998.202 kb on - strand at 998.202 kb on - strand at 998.202 kb on - strand at 998.202 kb on - strand at 998.333 kb on + strand, within RS_RS20910 at 998.333 kb on + strand, within RS_RS20910 at 998.333 kb on + strand, within RS_RS20910 at 998.333 kb on + strand, within RS_RS20910 at 998.334 kb on - strand, within RS_RS20910 at 998.334 kb on - strand, within RS_RS20910 at 998.507 kb on + strand, within RS_RS20910 at 998.507 kb on + strand, within RS_RS20910 at 998.508 kb on - strand, within RS_RS20910 at 998.508 kb on - strand, within RS_RS20910 at 998.508 kb on - strand, within RS_RS20910 at 998.508 kb on - strand, within RS_RS20910 at 998.508 kb on - strand, within RS_RS20910 at 998.675 kb on + strand, within RS_RS20910 at 998.675 kb on + strand, within RS_RS20910 at 998.676 kb on - strand, within RS_RS20910 at 998.676 kb on - strand, within RS_RS20910
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 996,875 + RS_RS20900 0.19 -0.4 996,875 + RS_RS20900 0.19 -0.0 996,875 + RS_RS20900 0.19 -0.6 996,875 + RS_RS20900 0.19 +0.6 996,875 + RS_RS20900 0.19 -1.2 996,876 - RS_RS20900 0.19 +0.9 997,048 + RS_RS20900 0.38 -0.4 997,067 - RS_RS20900 0.40 -0.4 997,067 - RS_RS20900 0.40 +0.8 997,124 + RS_RS20900 0.47 +1.9 997,144 + RS_RS20900 0.49 +1.1 997,179 - RS_RS20900 0.53 +0.1 997,179 - RS_RS20900 0.53 -1.2 997,193 + RS_RS20900 0.54 +1.1 997,824 + +0.3 997,824 + +0.4 997,824 + -1.9 997,824 + +0.1 997,824 + -0.2 997,879 + RS_RS20905 0.31 -0.1 997,879 + RS_RS20905 0.31 +1.1 997,880 - RS_RS20905 0.32 -0.6 997,880 - RS_RS20905 0.32 -2.6 997,960 + RS_RS20905 0.68 +0.7 997,960 + RS_RS20905 0.68 +1.1 997,960 + RS_RS20905 0.68 +0.7 997,960 + RS_RS20905 0.68 +0.9 997,961 - RS_RS20905 0.68 +1.1 997,961 - RS_RS20905 0.68 +0.6 997,967 - RS_RS20905 0.71 -0.9 997,975 + RS_RS20905 0.74 +0.4 997,975 + RS_RS20905 0.74 -0.3 997,976 - RS_RS20905 0.75 +0.8 998,138 + -0.4 998,139 - +1.3 998,201 + +1.1 998,202 - -0.9 998,202 - +1.1 998,202 - +1.1 998,202 - +1.1 998,333 + RS_RS20910 0.16 -0.9 998,333 + RS_RS20910 0.16 +0.6 998,333 + RS_RS20910 0.16 +1.1 998,333 + RS_RS20910 0.16 +1.0 998,334 - RS_RS20910 0.17 -1.1 998,334 - RS_RS20910 0.17 -1.3 998,507 + RS_RS20910 0.31 +2.0 998,507 + RS_RS20910 0.31 +3.2 998,508 - RS_RS20910 0.31 +0.4 998,508 - RS_RS20910 0.31 -0.5 998,508 - RS_RS20910 0.31 -0.3 998,508 - RS_RS20910 0.31 +1.1 998,508 - RS_RS20910 0.31 -0.9 998,675 + RS_RS20910 0.45 +1.7 998,675 + RS_RS20910 0.45 +0.6 998,676 - RS_RS20910 0.45 +1.7 998,676 - RS_RS20910 0.45 +2.7
Or see this region's nucleotide sequence