Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20135 and RS_RS20140 are separated by 3 nucleotides RS_RS20140 and RS_RS20145 are separated by 14 nucleotides RS_RS20145 and RS_RS20150 are separated by 97 nucleotides
RS_RS20135: RS_RS20135 - phospholipase, at 768,372 to 770,330
_RS20135
RS_RS20140: RS_RS20140 - sel1 repeat family protein, at 770,334 to 771,644
_RS20140
RS_RS20145: RS_RS20145 - PAAR domain-containing protein, at 771,659 to 771,949
_RS20145
RS_RS20150: RS_RS20150 - hypothetical protein, at 772,047 to 772,697
_RS20150
Position (kb) 770
771
772 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 769.440 kb on + strand, within RS_RS20135 at 769.440 kb on + strand at 769.440 kb on + strand, within RS_RS20135 at 769.440 kb on + strand, within RS_RS20135 at 769.441 kb on - strand, within RS_RS20135 at 769.476 kb on + strand, within RS_RS20135 at 769.477 kb on - strand, within RS_RS20135 at 769.477 kb on - strand, within RS_RS20135 at 769.477 kb on - strand, within RS_RS20135 at 769.492 kb on - strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.640 kb on + strand, within RS_RS20135 at 769.641 kb on - strand, within RS_RS20135 at 769.641 kb on - strand, within RS_RS20135 at 769.641 kb on - strand, within RS_RS20135 at 769.641 kb on - strand, within RS_RS20135 at 769.641 kb on - strand, within RS_RS20135 at 769.641 kb on - strand, within RS_RS20135 at 769.645 kb on - strand, within RS_RS20135 at 769.645 kb on - strand, within RS_RS20135 at 769.892 kb on - strand, within RS_RS20135 at 769.892 kb on - strand, within RS_RS20135 at 769.892 kb on - strand, within RS_RS20135 at 770.007 kb on + strand, within RS_RS20135 at 770.007 kb on + strand, within RS_RS20135 at 770.007 kb on + strand, within RS_RS20135 at 770.007 kb on + strand, within RS_RS20135 at 770.008 kb on - strand, within RS_RS20135 at 770.008 kb on - strand, within RS_RS20135 at 770.008 kb on - strand, within RS_RS20135 at 770.008 kb on - strand, within RS_RS20135 at 770.013 kb on + strand, within RS_RS20135 at 770.014 kb on - strand, within RS_RS20135 at 770.014 kb on - strand, within RS_RS20135 at 770.014 kb on - strand, within RS_RS20135 at 770.319 kb on + strand at 770.319 kb on + strand at 770.319 kb on + strand at 770.320 kb on - strand at 770.320 kb on - strand at 770.323 kb on + strand at 770.324 kb on - strand at 770.324 kb on - strand at 770.423 kb on + strand at 770.423 kb on + strand at 770.526 kb on + strand, within RS_RS20140 at 770.527 kb on - strand, within RS_RS20140 at 770.574 kb on + strand, within RS_RS20140 at 770.575 kb on - strand, within RS_RS20140 at 770.575 kb on - strand, within RS_RS20140 at 770.577 kb on + strand, within RS_RS20140 at 770.595 kb on + strand, within RS_RS20140 at 770.595 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.604 kb on + strand, within RS_RS20140 at 770.605 kb on - strand, within RS_RS20140 at 770.605 kb on - strand, within RS_RS20140 at 770.605 kb on - strand, within RS_RS20140 at 770.605 kb on - strand, within RS_RS20140 at 770.605 kb on - strand, within RS_RS20140 at 770.727 kb on + strand, within RS_RS20140 at 770.727 kb on + strand, within RS_RS20140 at 770.728 kb on - strand, within RS_RS20140 at 770.728 kb on - strand, within RS_RS20140 at 770.742 kb on + strand, within RS_RS20140 at 770.742 kb on + strand, within RS_RS20140 at 770.757 kb on + strand, within RS_RS20140 at 770.793 kb on + strand, within RS_RS20140 at 770.793 kb on + strand, within RS_RS20140 at 770.793 kb on + strand, within RS_RS20140 at 770.794 kb on - strand, within RS_RS20140 at 770.794 kb on - strand, within RS_RS20140 at 770.838 kb on + strand, within RS_RS20140 at 770.839 kb on - strand, within RS_RS20140 at 770.839 kb on - strand, within RS_RS20140 at 770.839 kb on - strand, within RS_RS20140 at 770.936 kb on + strand, within RS_RS20140 at 770.936 kb on + strand, within RS_RS20140 at 770.936 kb on + strand, within RS_RS20140 at 770.936 kb on + strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.937 kb on - strand, within RS_RS20140 at 770.953 kb on + strand, within RS_RS20140 at 770.953 kb on + strand, within RS_RS20140 at 771.081 kb on + strand, within RS_RS20140 at 771.082 kb on - strand, within RS_RS20140 at 771.082 kb on - strand, within RS_RS20140 at 771.082 kb on - strand, within RS_RS20140 at 771.082 kb on - strand, within RS_RS20140 at 771.543 kb on + strand at 771.543 kb on + strand at 771.627 kb on + strand at 771.628 kb on - strand at 771.642 kb on + strand at 771.643 kb on - strand at 771.643 kb on - strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.668 kb on + strand at 771.669 kb on - strand at 771.669 kb on - strand at 771.669 kb on - strand at 771.669 kb on - strand at 771.707 kb on - strand, within RS_RS20145 at 771.742 kb on + strand, within RS_RS20145 at 771.742 kb on + strand, within RS_RS20145 at 771.947 kb on + strand at 771.947 kb on + strand at 771.948 kb on - strand at 771.948 kb on - strand at 771.948 kb on - strand at 772.041 kb on + strand at 772.067 kb on + strand at 772.068 kb on - strand at 772.075 kb on + strand at 772.075 kb on + strand at 772.075 kb on + strand at 772.075 kb on + strand at 772.168 kb on + strand, within RS_RS20150 at 772.169 kb on - strand, within RS_RS20150 at 772.169 kb on - strand, within RS_RS20150 at 772.220 kb on - strand, within RS_RS20150 at 772.220 kb on - strand, within RS_RS20150 at 772.242 kb on + strand, within RS_RS20150 at 772.242 kb on + strand, within RS_RS20150 at 772.242 kb on + strand, within RS_RS20150 at 772.242 kb on + strand, within RS_RS20150 at 772.381 kb on - strand, within RS_RS20150 at 772.381 kb on - strand, within RS_RS20150 at 772.381 kb on - strand, within RS_RS20150 at 772.381 kb on - strand, within RS_RS20150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 769,440 + RS_RS20135 0.55 +0.7 769,440 + +1.2 769,440 + RS_RS20135 0.55 -1.3 769,440 + RS_RS20135 0.55 -0.5 769,441 - RS_RS20135 0.55 -0.2 769,476 + RS_RS20135 0.56 +0.9 769,477 - RS_RS20135 0.56 -2.1 769,477 - RS_RS20135 0.56 -1.1 769,477 - RS_RS20135 0.56 -1.1 769,492 - RS_RS20135 0.57 -0.2 769,640 + RS_RS20135 0.65 -3.3 769,640 + RS_RS20135 0.65 -0.6 769,640 + RS_RS20135 0.65 -2.0 769,640 + RS_RS20135 0.65 +0.6 769,640 + RS_RS20135 0.65 +1.4 769,640 + RS_RS20135 0.65 -0.8 769,640 + RS_RS20135 0.65 +0.0 769,641 - RS_RS20135 0.65 +1.2 769,641 - RS_RS20135 0.65 +1.2 769,641 - RS_RS20135 0.65 -0.4 769,641 - RS_RS20135 0.65 +0.5 769,641 - RS_RS20135 0.65 +0.7 769,641 - RS_RS20135 0.65 +0.6 769,645 - RS_RS20135 0.65 +0.4 769,645 - RS_RS20135 0.65 +1.2 769,892 - RS_RS20135 0.78 +0.1 769,892 - RS_RS20135 0.78 +0.4 769,892 - RS_RS20135 0.78 -3.7 770,007 + RS_RS20135 0.83 -0.8 770,007 + RS_RS20135 0.83 -0.9 770,007 + RS_RS20135 0.83 +1.2 770,007 + RS_RS20135 0.83 +1.3 770,008 - RS_RS20135 0.84 +0.1 770,008 - RS_RS20135 0.84 -0.7 770,008 - RS_RS20135 0.84 -3.3 770,008 - RS_RS20135 0.84 -2.5 770,013 + RS_RS20135 0.84 +0.2 770,014 - RS_RS20135 0.84 +1.2 770,014 - RS_RS20135 0.84 -1.4 770,014 - RS_RS20135 0.84 -1.1 770,319 + +0.1 770,319 + -2.3 770,319 + +0.8 770,320 - -0.9 770,320 - -2.0 770,323 + -0.0 770,324 - +1.3 770,324 - +1.1 770,423 + -3.6 770,423 + -1.4 770,526 + RS_RS20140 0.15 -4.2 770,527 - RS_RS20140 0.15 -0.8 770,574 + RS_RS20140 0.18 -1.4 770,575 - RS_RS20140 0.18 -2.9 770,575 - RS_RS20140 0.18 -2.5 770,577 + RS_RS20140 0.19 -4.6 770,595 + RS_RS20140 0.20 +1.2 770,595 + RS_RS20140 0.20 +1.2 770,604 + RS_RS20140 0.21 -2.0 770,604 + RS_RS20140 0.21 +1.2 770,604 + RS_RS20140 0.21 -3.8 770,604 + RS_RS20140 0.21 +1.2 770,604 + RS_RS20140 0.21 -1.8 770,604 + RS_RS20140 0.21 -4.1 770,604 + RS_RS20140 0.21 -4.7 770,604 + RS_RS20140 0.21 -0.4 770,604 + RS_RS20140 0.21 -2.7 770,605 - RS_RS20140 0.21 -4.0 770,605 - RS_RS20140 0.21 -2.3 770,605 - RS_RS20140 0.21 -2.6 770,605 - RS_RS20140 0.21 -4.4 770,605 - RS_RS20140 0.21 -1.6 770,727 + RS_RS20140 0.30 -2.1 770,727 + RS_RS20140 0.30 -4.3 770,728 - RS_RS20140 0.30 -1.4 770,728 - RS_RS20140 0.30 -0.8 770,742 + RS_RS20140 0.31 -2.2 770,742 + RS_RS20140 0.31 -3.7 770,757 + RS_RS20140 0.32 -0.8 770,793 + RS_RS20140 0.35 -3.8 770,793 + RS_RS20140 0.35 -2.7 770,793 + RS_RS20140 0.35 -3.1 770,794 - RS_RS20140 0.35 -2.7 770,794 - RS_RS20140 0.35 -2.9 770,838 + RS_RS20140 0.38 -2.0 770,839 - RS_RS20140 0.39 +1.2 770,839 - RS_RS20140 0.39 -4.2 770,839 - RS_RS20140 0.39 -0.8 770,936 + RS_RS20140 0.46 -3.3 770,936 + RS_RS20140 0.46 -2.1 770,936 + RS_RS20140 0.46 -1.1 770,936 + RS_RS20140 0.46 -0.8 770,937 - RS_RS20140 0.46 -4.7 770,937 - RS_RS20140 0.46 -5.0 770,937 - RS_RS20140 0.46 -0.8 770,937 - RS_RS20140 0.46 +1.2 770,937 - RS_RS20140 0.46 -1.8 770,937 - RS_RS20140 0.46 -2.4 770,937 - RS_RS20140 0.46 -3.5 770,953 + RS_RS20140 0.47 -3.0 770,953 + RS_RS20140 0.47 +1.2 771,081 + RS_RS20140 0.57 -4.1 771,082 - RS_RS20140 0.57 +0.2 771,082 - RS_RS20140 0.57 +1.2 771,082 - RS_RS20140 0.57 -2.4 771,082 - RS_RS20140 0.57 -4.5 771,543 + -0.6 771,543 + +0.2 771,627 + +1.8 771,628 - +0.6 771,642 + +1.2 771,643 - +1.3 771,643 - +0.9 771,668 + +0.2 771,668 + -2.4 771,668 + +0.6 771,668 + -0.2 771,668 + -0.8 771,668 + -1.9 771,668 + +1.3 771,668 + -1.2 771,669 - -0.7 771,669 - +0.3 771,669 - -0.3 771,669 - +0.2 771,707 - RS_RS20145 0.16 -0.6 771,742 + RS_RS20145 0.29 +0.5 771,742 + RS_RS20145 0.29 +0.2 771,947 + +1.2 771,947 + -1.6 771,948 - -0.8 771,948 - +0.3 771,948 - -0.7 772,041 + -0.4 772,067 + -0.5 772,068 - -0.9 772,075 + -1.0 772,075 + +0.2 772,075 + -1.4 772,075 + -2.8 772,168 + RS_RS20150 0.19 +0.2 772,169 - RS_RS20150 0.19 +0.6 772,169 - RS_RS20150 0.19 +2.2 772,220 - RS_RS20150 0.27 +0.2 772,220 - RS_RS20150 0.27 +1.6 772,242 + RS_RS20150 0.30 -1.3 772,242 + RS_RS20150 0.30 -1.6 772,242 + RS_RS20150 0.30 +0.2 772,242 + RS_RS20150 0.30 +0.1 772,381 - RS_RS20150 0.51 -2.0 772,381 - RS_RS20150 0.51 -0.6 772,381 - RS_RS20150 0.51 +1.2 772,381 - RS_RS20150 0.51 +0.0
Or see this region's nucleotide sequence