Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19875 and RS_RS26145 overlap by 85 nucleotides RS_RS26145 and RS_RS19880 are separated by 256 nucleotides RS_RS19880 and RS_RS19885 are separated by 297 nucleotides RS_RS19885 and RS_RS19890 are separated by 97 nucleotides
RS_RS19875: RS_RS19875 - site-specific DNA-methyltransferase, at 711,971 to 712,336
_RS19875
RS_RS26145: RS_RS26145 - type III secretion system effector protein, at 712,252 to 712,908
_RS26145
RS_RS19880: RS_RS19880 - hypothetical protein, at 713,165 to 713,437
_RS19880
RS_RS19885: RS_RS19885 - hypothetical protein, at 713,735 to 713,923
_RS19885
RS_RS19890: RS_RS19890 - hypothetical protein, at 714,021 to 714,371
_RS19890
Position (kb) 713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 712.194 kb on + strand, within RS_RS19875 at 712.271 kb on + strand at 712.272 kb on - strand at 712.335 kb on - strand at 712.347 kb on - strand, within RS_RS26145 at 712.347 kb on - strand, within RS_RS26145 at 712.403 kb on + strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.500 kb on + strand, within RS_RS26145 at 712.500 kb on + strand, within RS_RS26145 at 712.500 kb on + strand, within RS_RS26145 at 712.656 kb on - strand, within RS_RS26145 at 712.822 kb on + strand, within RS_RS26145 at 712.835 kb on + strand, within RS_RS26145 at 712.877 kb on + strand at 712.878 kb on - strand at 712.878 kb on - strand at 712.890 kb on - strand at 712.900 kb on + strand at 712.900 kb on + strand at 712.900 kb on + strand at 712.900 kb on + strand at 712.901 kb on - strand at 712.901 kb on - strand at 712.901 kb on - strand at 712.901 kb on - strand at 712.902 kb on + strand at 712.902 kb on + strand at 712.902 kb on + strand at 712.902 kb on + strand at 712.903 kb on - strand at 712.937 kb on + strand at 712.937 kb on + strand at 712.937 kb on + strand at 712.937 kb on + strand at 712.938 kb on - strand at 712.977 kb on + strand at 713.000 kb on + strand at 713.000 kb on + strand at 713.080 kb on + strand at 713.080 kb on + strand at 713.080 kb on + strand at 713.080 kb on + strand at 713.166 kb on + strand at 713.476 kb on + strand at 713.477 kb on - strand at 713.477 kb on - strand at 713.477 kb on - strand at 713.509 kb on - strand at 713.509 kb on - strand at 713.564 kb on + strand at 713.758 kb on - strand, within RS_RS19885 at 713.758 kb on - strand, within RS_RS19885 at 713.758 kb on - strand, within RS_RS19885 at 713.758 kb on - strand, within RS_RS19885 at 713.776 kb on + strand, within RS_RS19885 at 713.860 kb on - strand, within RS_RS19885 at 713.860 kb on - strand, within RS_RS19885 at 713.902 kb on - strand, within RS_RS19885 at 713.902 kb on - strand, within RS_RS19885 at 713.902 kb on - strand, within RS_RS19885 at 713.902 kb on - strand, within RS_RS19885 at 713.959 kb on + strand at 713.959 kb on + strand at 713.959 kb on + strand at 713.959 kb on + strand at 714.007 kb on + strand at 714.007 kb on + strand at 714.008 kb on - strand at 714.008 kb on - strand at 714.008 kb on - strand at 714.008 kb on - strand at 714.008 kb on - strand at 714.050 kb on - strand at 714.227 kb on - strand, within RS_RS19890 at 714.227 kb on - strand, within RS_RS19890 at 714.239 kb on - strand, within RS_RS19890 at 714.239 kb on - strand, within RS_RS19890 at 714.239 kb on - strand, within RS_RS19890 at 714.239 kb on - strand, within RS_RS19890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 712,194 + RS_RS19875 0.61 +1.0 712,271 + +0.5 712,272 - -0.8 712,335 - -1.8 712,347 - RS_RS26145 0.14 -0.4 712,347 - RS_RS26145 0.14 -0.9 712,403 + RS_RS26145 0.23 +0.2 712,404 - RS_RS26145 0.23 +0.3 712,404 - RS_RS26145 0.23 +1.6 712,404 - RS_RS26145 0.23 -1.3 712,404 - RS_RS26145 0.23 +2.1 712,432 - RS_RS26145 0.27 -0.8 712,432 - RS_RS26145 0.27 +0.4 712,432 - RS_RS26145 0.27 +0.1 712,432 - RS_RS26145 0.27 +0.2 712,432 - RS_RS26145 0.27 -0.0 712,432 - RS_RS26145 0.27 -0.5 712,500 + RS_RS26145 0.38 -0.6 712,500 + RS_RS26145 0.38 +1.2 712,500 + RS_RS26145 0.38 -1.1 712,656 - RS_RS26145 0.61 +1.4 712,822 + RS_RS26145 0.87 -0.9 712,835 + RS_RS26145 0.89 +2.0 712,877 + -3.5 712,878 - -0.5 712,878 - -0.8 712,890 - -0.9 712,900 + -0.1 712,900 + +1.2 712,900 + +2.0 712,900 + +1.8 712,901 - -0.8 712,901 - -1.1 712,901 - -2.1 712,901 - -1.9 712,902 + +0.0 712,902 + -1.0 712,902 + -1.6 712,902 + -0.6 712,903 - +0.4 712,937 + -1.4 712,937 + -0.6 712,937 + +1.2 712,937 + -1.1 712,938 - -0.3 712,977 + -0.6 713,000 + +0.2 713,000 + +0.9 713,080 + -1.9 713,080 + +0.2 713,080 + +0.1 713,080 + +0.9 713,166 + -0.0 713,476 + +1.2 713,477 - -1.3 713,477 - +1.2 713,477 - +1.6 713,509 - +1.2 713,509 - +1.2 713,564 + -0.8 713,758 - RS_RS19885 0.12 +1.2 713,758 - RS_RS19885 0.12 -1.9 713,758 - RS_RS19885 0.12 +0.8 713,758 - RS_RS19885 0.12 +1.8 713,776 + RS_RS19885 0.22 +0.2 713,860 - RS_RS19885 0.66 -3.9 713,860 - RS_RS19885 0.66 -1.3 713,902 - RS_RS19885 0.88 +0.3 713,902 - RS_RS19885 0.88 +4.4 713,902 - RS_RS19885 0.88 +0.2 713,902 - RS_RS19885 0.88 -0.5 713,959 + +1.2 713,959 + -1.1 713,959 + +1.2 713,959 + +1.2 714,007 + -0.8 714,007 + +0.2 714,008 - +0.1 714,008 - +1.2 714,008 - +1.0 714,008 - +3.2 714,008 - +0.1 714,050 - +0.8 714,227 - RS_RS19890 0.59 -0.2 714,227 - RS_RS19890 0.59 +1.2 714,239 - RS_RS19890 0.62 -0.4 714,239 - RS_RS19890 0.62 +1.2 714,239 - RS_RS19890 0.62 -1.0 714,239 - RS_RS19890 0.62 +1.2
Or see this region's nucleotide sequence