Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18150

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18140 and RS_RS18145 are separated by 76 nucleotidesRS_RS18145 and RS_RS18150 overlap by 4 nucleotidesRS_RS18150 and RS_RS18155 are separated by 588 nucleotides RS_RS18140: RS_RS18140 - IS5/IS1182 family transposase, at 254,650 to 255,636 _RS18140 RS_RS18145: RS_RS18145 - hypothetical protein, at 255,713 to 256,201 _RS18145 RS_RS18150: RS_RS18150 - hypothetical protein, at 256,198 to 257,904 _RS18150 RS_RS18155: RS_RS18155 - phytanoyl-CoA dioxygenase, at 258,493 to 259,284 _RS18155 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 255.709 kb on + strandat 255.733 kb on + strandat 255.734 kb on - strandat 255.734 kb on - strandat 255.734 kb on - strandat 255.735 kb on + strandat 255.735 kb on + strandat 255.735 kb on + strandat 255.736 kb on - strandat 255.751 kb on - strandat 255.801 kb on - strand, within RS_RS18145at 255.801 kb on - strand, within RS_RS18145at 255.823 kb on + strand, within RS_RS18145at 255.823 kb on + strand, within RS_RS18145at 255.825 kb on + strand, within RS_RS18145at 255.855 kb on + strand, within RS_RS18145at 255.856 kb on - strand, within RS_RS18145at 255.897 kb on + strand, within RS_RS18145at 255.898 kb on - strand, within RS_RS18145at 255.953 kb on + strand, within RS_RS18145at 256.066 kb on + strand, within RS_RS18145at 256.067 kb on - strand, within RS_RS18145at 256.067 kb on - strand, within RS_RS18145at 256.079 kb on - strand, within RS_RS18145at 256.079 kb on - strand, within RS_RS18145at 256.109 kb on + strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.117 kb on - strand, within RS_RS18145at 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.244 kb on + strandat 256.244 kb on + strandat 256.244 kb on + strandat 256.277 kb on + strandat 256.277 kb on + strandat 256.277 kb on + strandat 256.355 kb on + strandat 256.556 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.566 kb on - strand, within RS_RS18150at 256.566 kb on - strand, within RS_RS18150at 256.580 kb on + strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.698 kb on - strand, within RS_RS18150at 256.718 kb on + strand, within RS_RS18150at 256.719 kb on - strand, within RS_RS18150at 256.719 kb on - strand, within RS_RS18150at 256.803 kb on - strand, within RS_RS18150at 256.803 kb on - strand, within RS_RS18150at 256.955 kb on + strand, within RS_RS18150at 257.080 kb on + strand, within RS_RS18150at 257.080 kb on + strand, within RS_RS18150at 257.080 kb on + strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.153 kb on + strand, within RS_RS18150at 257.153 kb on + strand, within RS_RS18150at 257.153 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.188 kb on - strand, within RS_RS18150at 257.188 kb on - strand, within RS_RS18150at 257.190 kb on - strand, within RS_RS18150at 257.391 kb on - strand, within RS_RS18150at 257.403 kb on - strand, within RS_RS18150at 257.403 kb on - strand, within RS_RS18150at 257.403 kb on - strand, within RS_RS18150at 257.591 kb on + strand, within RS_RS18150at 257.591 kb on + strand, within RS_RS18150at 257.591 kb on + strand, within RS_RS18150at 257.591 kb on + strand, within RS_RS18150at 257.591 kb on + strand, within RS_RS18150at 257.592 kb on - strand, within RS_RS18150at 257.592 kb on - strand, within RS_RS18150at 257.623 kb on + strand, within RS_RS18150at 257.623 kb on + strand, within RS_RS18150at 257.623 kb on + strand, within RS_RS18150at 257.624 kb on - strand, within RS_RS18150at 257.644 kb on - strand, within RS_RS18150at 257.663 kb on + strand, within RS_RS18150at 257.663 kb on + strand, within RS_RS18150at 257.897 kb on + strandat 257.897 kb on + strandat 257.897 kb on + strandat 257.897 kb on + strandat 257.898 kb on - strandat 257.970 kb on + strandat 258.026 kb on + strandat 258.026 kb on + strandat 258.066 kb on - strandat 258.098 kb on + strandat 258.098 kb on + strandat 258.098 kb on + strandat 258.099 kb on - strandat 258.099 kb on - strandat 258.099 kb on - strandat 258.099 kb on - strandat 258.099 kb on - strandat 258.131 kb on + strandat 258.222 kb on + strandat 258.232 kb on + strandat 258.232 kb on + strandat 258.233 kb on - strandat 258.233 kb on - strandat 258.323 kb on + strandat 258.441 kb on + strandat 258.441 kb on + strandat 258.571 kb on + strandat 258.571 kb on + strandat 258.685 kb on + strand, within RS_RS18155

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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255,709 + +3.9
255,733 + -1.9
255,734 - +1.4
255,734 - +1.4
255,734 - +0.2
255,735 + +1.4
255,735 + -0.2
255,735 + -1.4
255,736 - -0.1
255,751 - +0.3
255,801 - RS_RS18145 0.18 +1.4
255,801 - RS_RS18145 0.18 -2.8
255,823 + RS_RS18145 0.22 +1.7
255,823 + RS_RS18145 0.22 +1.4
255,825 + RS_RS18145 0.23 +1.4
255,855 + RS_RS18145 0.29 -0.2
255,856 - RS_RS18145 0.29 +0.1
255,897 + RS_RS18145 0.38 -0.7
255,898 - RS_RS18145 0.38 -1.8
255,953 + RS_RS18145 0.49 -0.6
256,066 + RS_RS18145 0.72 -0.9
256,067 - RS_RS18145 0.72 -2.6
256,067 - RS_RS18145 0.72 -1.0
256,079 - RS_RS18145 0.75 -0.3
256,079 - RS_RS18145 0.75 +2.1
256,109 + RS_RS18145 0.81 -1.2
256,110 - RS_RS18145 0.81 +2.2
256,110 - RS_RS18145 0.81 -0.3
256,110 - RS_RS18145 0.81 -1.7
256,117 - RS_RS18145 0.83 +0.6
256,234 + -0.1
256,234 + +1.4
256,234 + -0.1
256,234 + -1.8
256,234 + +0.2
256,235 - -0.3
256,235 - +0.1
256,235 - -0.8
256,235 - +1.2
256,244 + -0.1
256,244 + +2.1
256,244 + +0.9
256,277 + -1.1
256,277 + +0.2
256,277 + +0.4
256,355 + +0.4
256,556 + RS_RS18150 0.21 -0.0
256,565 + RS_RS18150 0.21 -1.4
256,565 + RS_RS18150 0.21 +0.2
256,565 + RS_RS18150 0.21 +0.9
256,566 - RS_RS18150 0.22 -0.1
256,566 - RS_RS18150 0.22 +1.4
256,580 + RS_RS18150 0.22 +0.4
256,581 - RS_RS18150 0.22 -0.6
256,581 - RS_RS18150 0.22 -0.9
256,581 - RS_RS18150 0.22 -0.2
256,698 - RS_RS18150 0.29 +1.4
256,718 + RS_RS18150 0.30 +0.4
256,719 - RS_RS18150 0.31 +0.2
256,719 - RS_RS18150 0.31 -1.4
256,803 - RS_RS18150 0.35 -2.6
256,803 - RS_RS18150 0.35 +1.4
256,955 + RS_RS18150 0.44 -0.9
257,080 + RS_RS18150 0.52 +1.5
257,080 + RS_RS18150 0.52 +1.4
257,080 + RS_RS18150 0.52 +3.3
257,081 - RS_RS18150 0.52 -2.3
257,081 - RS_RS18150 0.52 +0.2
257,081 - RS_RS18150 0.52 -0.5
257,081 - RS_RS18150 0.52 -0.8
257,153 + RS_RS18150 0.56 -1.3
257,153 + RS_RS18150 0.56 +0.9
257,153 + RS_RS18150 0.56 -0.3
257,187 + RS_RS18150 0.58 -1.1
257,187 + RS_RS18150 0.58 +1.4
257,187 + RS_RS18150 0.58 -0.1
257,187 + RS_RS18150 0.58 -0.1
257,188 - RS_RS18150 0.58 -0.1
257,188 - RS_RS18150 0.58 -0.6
257,190 - RS_RS18150 0.58 -0.2
257,391 - RS_RS18150 0.70 -1.2
257,403 - RS_RS18150 0.71 +0.4
257,403 - RS_RS18150 0.71 +0.9
257,403 - RS_RS18150 0.71 +0.6
257,591 + RS_RS18150 0.82 +1.4
257,591 + RS_RS18150 0.82 +0.3
257,591 + RS_RS18150 0.82 +0.3
257,591 + RS_RS18150 0.82 +0.3
257,591 + RS_RS18150 0.82 -0.9
257,592 - RS_RS18150 0.82 +0.4
257,592 - RS_RS18150 0.82 -1.1
257,623 + RS_RS18150 0.83 -2.8
257,623 + RS_RS18150 0.83 +1.5
257,623 + RS_RS18150 0.83 +1.2
257,624 - RS_RS18150 0.84 -0.8
257,644 - RS_RS18150 0.85 +0.1
257,663 + RS_RS18150 0.86 -2.1
257,663 + RS_RS18150 0.86 +1.4
257,897 + +0.1
257,897 + -0.7
257,897 + +0.3
257,897 + -2.7
257,898 - +1.4
257,970 + -0.1
258,026 + +0.2
258,026 + -0.1
258,066 - -0.6
258,098 + +0.2
258,098 + -1.4
258,098 + -2.2
258,099 - +0.4
258,099 - +1.4
258,099 - +1.4
258,099 - +1.4
258,099 - -0.2
258,131 + +0.6
258,222 + -2.1
258,232 + +0.8
258,232 + +0.1
258,233 - -0.7
258,233 - +1.4
258,323 + +1.3
258,441 + -0.4
258,441 + +1.4
258,571 + -0.5
258,571 + -0.3
258,685 + RS_RS18155 0.24 +1.4

Or see this region's nucleotide sequence