Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS14710 and RS_RS14715 are separated by 117 nucleotides RS_RS14715 and RS_RS14720 are separated by 84 nucleotides
RS_RS14710: RS_RS14710 - sensor histidine kinase, at 3,167,052 to 3,168,554
_RS14710
RS_RS14715: RS_RS14715 - iron ABC transporter substrate-binding protein, at 3,168,672 to 3,169,769
_RS14715
RS_RS14720: RS_RS14720 - iron ABC transporter permease, at 3,169,854 to 3,171,665
_RS14720
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3167.772 kb on + strand, within RS_RS14710 at 3167.773 kb on - strand, within RS_RS14710 at 3167.865 kb on + strand, within RS_RS14710 at 3167.866 kb on - strand, within RS_RS14710 at 3168.364 kb on - strand, within RS_RS14710 at 3168.408 kb on + strand at 3168.581 kb on - strand at 3168.582 kb on + strand at 3168.903 kb on + strand, within RS_RS14715 at 3168.903 kb on + strand, within RS_RS14715 at 3168.931 kb on - strand, within RS_RS14715 at 3168.931 kb on - strand, within RS_RS14715 at 3168.931 kb on - strand, within RS_RS14715 at 3169.026 kb on + strand, within RS_RS14715 at 3169.026 kb on + strand, within RS_RS14715 at 3169.080 kb on + strand, within RS_RS14715 at 3169.081 kb on - strand, within RS_RS14715 at 3169.108 kb on - strand, within RS_RS14715 at 3169.108 kb on - strand, within RS_RS14715 at 3169.128 kb on + strand, within RS_RS14715 at 3169.129 kb on - strand, within RS_RS14715 at 3169.233 kb on + strand, within RS_RS14715 at 3169.233 kb on + strand, within RS_RS14715 at 3169.233 kb on + strand, within RS_RS14715 at 3169.299 kb on + strand, within RS_RS14715 at 3169.299 kb on + strand, within RS_RS14715 at 3169.398 kb on + strand, within RS_RS14715 at 3169.399 kb on - strand, within RS_RS14715 at 3169.416 kb on + strand, within RS_RS14715 at 3169.551 kb on + strand, within RS_RS14715 at 3169.551 kb on + strand, within RS_RS14715 at 3170.295 kb on + strand, within RS_RS14720 at 3170.295 kb on + strand, within RS_RS14720 at 3170.295 kb on + strand, within RS_RS14720 at 3170.297 kb on + strand, within RS_RS14720 at 3170.298 kb on - strand, within RS_RS14720 at 3170.343 kb on + strand, within RS_RS14720 at 3170.397 kb on + strand, within RS_RS14720 at 3170.397 kb on + strand, within RS_RS14720 at 3170.398 kb on - strand, within RS_RS14720 at 3170.403 kb on + strand, within RS_RS14720 at 3170.526 kb on + strand, within RS_RS14720 at 3170.527 kb on - strand, within RS_RS14720 at 3170.620 kb on - strand, within RS_RS14720 at 3170.620 kb on - strand, within RS_RS14720 at 3170.626 kb on - strand, within RS_RS14720 at 3170.727 kb on + strand, within RS_RS14720 at 3170.727 kb on + strand, within RS_RS14720 at 3170.728 kb on - strand, within RS_RS14720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 3,167,772 + RS_RS14710 0.48 +0.1 3,167,773 - RS_RS14710 0.48 +1.3 3,167,865 + RS_RS14710 0.54 +0.4 3,167,866 - RS_RS14710 0.54 -1.5 3,168,364 - RS_RS14710 0.87 +1.7 3,168,408 + +0.4 3,168,581 - +0.2 3,168,582 + -0.0 3,168,903 + RS_RS14715 0.21 -1.0 3,168,903 + RS_RS14715 0.21 +3.6 3,168,931 - RS_RS14715 0.24 +0.6 3,168,931 - RS_RS14715 0.24 -0.3 3,168,931 - RS_RS14715 0.24 -0.2 3,169,026 + RS_RS14715 0.32 -1.1 3,169,026 + RS_RS14715 0.32 -1.6 3,169,080 + RS_RS14715 0.37 +0.5 3,169,081 - RS_RS14715 0.37 +1.3 3,169,108 - RS_RS14715 0.40 +1.7 3,169,108 - RS_RS14715 0.40 -0.3 3,169,128 + RS_RS14715 0.42 +1.1 3,169,129 - RS_RS14715 0.42 +1.1 3,169,233 + RS_RS14715 0.51 +3.7 3,169,233 + RS_RS14715 0.51 -0.6 3,169,233 + RS_RS14715 0.51 -1.2 3,169,299 + RS_RS14715 0.57 -0.7 3,169,299 + RS_RS14715 0.57 +1.7 3,169,398 + RS_RS14715 0.66 +0.1 3,169,399 - RS_RS14715 0.66 +1.5 3,169,416 + RS_RS14715 0.68 -0.4 3,169,551 + RS_RS14715 0.80 +0.6 3,169,551 + RS_RS14715 0.80 +0.3 3,170,295 + RS_RS14720 0.24 +0.7 3,170,295 + RS_RS14720 0.24 +0.3 3,170,295 + RS_RS14720 0.24 +3.3 3,170,297 + RS_RS14720 0.24 +1.7 3,170,298 - RS_RS14720 0.25 +0.6 3,170,343 + RS_RS14720 0.27 -0.5 3,170,397 + RS_RS14720 0.30 +0.7 3,170,397 + RS_RS14720 0.30 -0.0 3,170,398 - RS_RS14720 0.30 -1.1 3,170,403 + RS_RS14720 0.30 -0.7 3,170,526 + RS_RS14720 0.37 +0.1 3,170,527 - RS_RS14720 0.37 +2.0 3,170,620 - RS_RS14720 0.42 -0.0 3,170,620 - RS_RS14720 0.42 +0.4 3,170,626 - RS_RS14720 0.43 +1.5 3,170,727 + RS_RS14720 0.48 -1.5 3,170,727 + RS_RS14720 0.48 +1.7 3,170,728 - RS_RS14720 0.48 -0.7
Or see this region's nucleotide sequence