Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06115

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06105 and RS_RS06110 are separated by 291 nucleotidesRS_RS06110 and RS_RS06115 are separated by 78 nucleotidesRS_RS06115 and RS_RS06120 are separated by 56 nucleotides RS_RS06105: RS_RS06105 - ribosome biogenesis GTPase Der, at 1,288,497 to 1,289,840 _RS06105 RS_RS06110: RS_RS06110 - RNA-binding protein Hfq, at 1,290,132 to 1,290,371 _RS06110 RS_RS06115: RS_RS06115 - GTPase HflX, at 1,290,450 to 1,291,703 _RS06115 RS_RS06120: RS_RS06120 - FtsH protease activity modulator HflK, at 1,291,760 to 1,293,139 _RS06120 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -3 -2 -1 0 1at 1291.074 kb on + strand, within RS_RS06115at 1291.128 kb on + strand, within RS_RS06115at 1291.717 kb on + strandat 1292.183 kb on + strand, within RS_RS06120at 1292.402 kb on + strand, within RS_RS06120at 1292.567 kb on + strand, within RS_RS06120

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,291,074 + RS_RS06115 0.50 +0.0
1,291,128 + RS_RS06115 0.54 +1.1
1,291,717 + +0.7
1,292,183 + RS_RS06120 0.31 -3.0
1,292,402 + RS_RS06120 0.47 +1.1
1,292,567 + RS_RS06120 0.58 +0.1

Or see this region's nucleotide sequence