Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05575

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05565 and RS_RS05570 are separated by 28 nucleotidesRS_RS05570 and RS_RS05575 are separated by 9 nucleotidesRS_RS05575 and RS_RS05580 are separated by 108 nucleotides RS_RS05565: RS_RS05565 - lipoprotein-releasing system ATP-binding protein LolD, at 1,175,005 to 1,175,739 _RS05565 RS_RS05570: RS_RS05570 - TatD family deoxyribonuclease, at 1,175,768 to 1,176,583 _RS05570 RS_RS05575: RS_RS05575 - DNA internalization-related competence protein ComEC/Rec2, at 1,176,593 to 1,179,136 _RS05575 RS_RS05580: RS_RS05580 - circularly permuted type 2 ATP-grasp protein, at 1,179,245 to 1,180,726 _RS05580 Position (kb) 1176 1177 1178 1179 1180Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1176.266 kb on + strand, within RS_RS05570at 1176.266 kb on + strand, within RS_RS05570at 1176.267 kb on - strand, within RS_RS05570at 1176.977 kb on + strand, within RS_RS05575at 1177.173 kb on - strand, within RS_RS05575at 1177.178 kb on + strand, within RS_RS05575at 1177.179 kb on - strand, within RS_RS05575at 1177.179 kb on - strand, within RS_RS05575at 1178.417 kb on + strand, within RS_RS05575at 1178.418 kb on - strand, within RS_RS05575at 1178.418 kb on - strand, within RS_RS05575at 1178.651 kb on + strand, within RS_RS05575at 1178.819 kb on - strand, within RS_RS05575at 1179.134 kb on + strandat 1179.192 kb on - strandat 1179.292 kb on + strandat 1179.292 kb on + strandat 1179.464 kb on + strand, within RS_RS05580at 1179.464 kb on + strand, within RS_RS05580at 1179.465 kb on - strand, within RS_RS05580at 1179.465 kb on - strand, within RS_RS05580at 1179.614 kb on + strand, within RS_RS05580at 1179.614 kb on + strand, within RS_RS05580at 1179.614 kb on + strand, within RS_RS05580at 1179.615 kb on - strand, within RS_RS05580at 1179.615 kb on - strand, within RS_RS05580at 1179.615 kb on - strand, within RS_RS05580at 1179.615 kb on - strand, within RS_RS05580at 1179.722 kb on + strand, within RS_RS05580at 1179.723 kb on - strand, within RS_RS05580at 1179.723 kb on - strand, within RS_RS05580at 1179.774 kb on - strand, within RS_RS05580at 1179.815 kb on + strand, within RS_RS05580at 1179.815 kb on + strand, within RS_RS05580at 1179.816 kb on - strand, within RS_RS05580at 1179.983 kb on + strand, within RS_RS05580at 1179.983 kb on + strand, within RS_RS05580at 1179.984 kb on - strand, within RS_RS05580at 1179.984 kb on - strand, within RS_RS05580at 1179.984 kb on - strand, within RS_RS05580at 1179.984 kb on - strand, within RS_RS05580at 1179.985 kb on + strand, within RS_RS05580at 1179.986 kb on - strand, within RS_RS05580at 1180.079 kb on + strand, within RS_RS05580at 1180.079 kb on + strand, within RS_RS05580at 1180.080 kb on - strand, within RS_RS05580at 1180.080 kb on - strand, within RS_RS05580at 1180.080 kb on - strand, within RS_RS05580at 1180.080 kb on - strand, within RS_RS05580at 1180.082 kb on - strand, within RS_RS05580

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,176,266 + RS_RS05570 0.61 -0.4
1,176,266 + RS_RS05570 0.61 +1.9
1,176,267 - RS_RS05570 0.61 -0.4
1,176,977 + RS_RS05575 0.15 +2.2
1,177,173 - RS_RS05575 0.23 -0.4
1,177,178 + RS_RS05575 0.23 +1.2
1,177,179 - RS_RS05575 0.23 +1.0
1,177,179 - RS_RS05575 0.23 +0.2
1,178,417 + RS_RS05575 0.72 -1.3
1,178,418 - RS_RS05575 0.72 -1.4
1,178,418 - RS_RS05575 0.72 +1.2
1,178,651 + RS_RS05575 0.81 -1.5
1,178,819 - RS_RS05575 0.88 +1.2
1,179,134 + +0.2
1,179,192 - -0.9
1,179,292 + +0.3
1,179,292 + -0.4
1,179,464 + RS_RS05580 0.15 +0.1
1,179,464 + RS_RS05580 0.15 -0.8
1,179,465 - RS_RS05580 0.15 +2.9
1,179,465 - RS_RS05580 0.15 -0.9
1,179,614 + RS_RS05580 0.25 +0.8
1,179,614 + RS_RS05580 0.25 -1.4
1,179,614 + RS_RS05580 0.25 -2.9
1,179,615 - RS_RS05580 0.25 +0.2
1,179,615 - RS_RS05580 0.25 -1.8
1,179,615 - RS_RS05580 0.25 +0.4
1,179,615 - RS_RS05580 0.25 +0.7
1,179,722 + RS_RS05580 0.32 +1.2
1,179,723 - RS_RS05580 0.32 +0.6
1,179,723 - RS_RS05580 0.32 +1.2
1,179,774 - RS_RS05580 0.36 -0.5
1,179,815 + RS_RS05580 0.38 +1.0
1,179,815 + RS_RS05580 0.38 -0.4
1,179,816 - RS_RS05580 0.39 +0.1
1,179,983 + RS_RS05580 0.50 +0.6
1,179,983 + RS_RS05580 0.50 +1.9
1,179,984 - RS_RS05580 0.50 +1.2
1,179,984 - RS_RS05580 0.50 +1.6
1,179,984 - RS_RS05580 0.50 +1.2
1,179,984 - RS_RS05580 0.50 +0.5
1,179,985 + RS_RS05580 0.50 -1.0
1,179,986 - RS_RS05580 0.50 +1.2
1,180,079 + RS_RS05580 0.56 -0.2
1,180,079 + RS_RS05580 0.56 +0.5
1,180,080 - RS_RS05580 0.56 -0.2
1,180,080 - RS_RS05580 0.56 +3.3
1,180,080 - RS_RS05580 0.56 +0.1
1,180,080 - RS_RS05580 0.56 +0.2
1,180,082 - RS_RS05580 0.56 -1.3

Or see this region's nucleotide sequence