Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04840 and RS_RS04845 are separated by 5 nucleotides RS_RS04845 and RS_RS04850 overlap by 19 nucleotides RS_RS04850 and RS_RS04855 are separated by 85 nucleotides
RS_RS04840: RS_RS04840 - DNA topoisomerase IV subunit A, at 1,027,781 to 1,030,126
_RS04840
RS_RS04845: RS_RS04845 - chromate transporter, at 1,030,132 to 1,030,713
_RS04845
RS_RS04850: RS_RS04850 - chromate transporter, at 1,030,695 to 1,031,240
_RS04850
RS_RS04855: RS_RS04855 - L-lactate permease, at 1,031,326 to 1,033,014
_RS04855
Position (kb) 1030
1031 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1030.480 kb on + strand, within RS_RS04845 at 1030.481 kb on - strand, within RS_RS04845 at 1030.481 kb on - strand, within RS_RS04845 at 1030.833 kb on + strand, within RS_RS04850 at 1030.833 kb on + strand, within RS_RS04850 at 1030.834 kb on - strand, within RS_RS04850 at 1030.834 kb on - strand, within RS_RS04850 at 1030.863 kb on + strand, within RS_RS04850 at 1030.863 kb on + strand, within RS_RS04850 at 1030.863 kb on + strand, within RS_RS04850 at 1030.863 kb on + strand, within RS_RS04850 at 1030.863 kb on + strand, within RS_RS04850 at 1030.863 kb on + strand, within RS_RS04850 at 1030.864 kb on - strand, within RS_RS04850 at 1030.864 kb on - strand, within RS_RS04850 at 1030.864 kb on - strand, within RS_RS04850 at 1031.239 kb on - strand at 1031.369 kb on + strand at 1031.432 kb on + strand at 1031.432 kb on + strand at 1031.675 kb on + strand, within RS_RS04855 at 1031.676 kb on - strand, within RS_RS04855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,030,480 + RS_RS04845 0.60 +2.2 1,030,481 - RS_RS04845 0.60 +0.9 1,030,481 - RS_RS04845 0.60 +0.4 1,030,833 + RS_RS04850 0.25 +1.3 1,030,833 + RS_RS04850 0.25 +0.5 1,030,834 - RS_RS04850 0.25 +1.3 1,030,834 - RS_RS04850 0.25 +1.3 1,030,863 + RS_RS04850 0.31 -1.3 1,030,863 + RS_RS04850 0.31 +1.3 1,030,863 + RS_RS04850 0.31 -1.7 1,030,863 + RS_RS04850 0.31 -0.5 1,030,863 + RS_RS04850 0.31 +0.3 1,030,863 + RS_RS04850 0.31 +0.1 1,030,864 - RS_RS04850 0.31 +0.9 1,030,864 - RS_RS04850 0.31 +2.3 1,030,864 - RS_RS04850 0.31 -2.8 1,031,239 - +0.7 1,031,369 + -0.6 1,031,432 + +0.3 1,031,432 + +1.9 1,031,675 + RS_RS04855 0.21 +0.3 1,031,676 - RS_RS04855 0.21 -0.7
Or see this region's nucleotide sequence