Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04570 and RS_RS04575 are separated by 156 nucleotides RS_RS04575 and RS_RS04580 overlap by 11 nucleotides RS_RS04580 and RS_RS04585 are separated by 32 nucleotides
RS_RS04570: RS_RS04570 - deacetylase, at 970,704 to 971,627
_RS04570
RS_RS04575: RS_RS04575 - methionine import ATP-binding protein MetN, at 971,784 to 972,836
_RS04575
RS_RS04580: RS_RS04580 - ABC transporter permease, at 972,826 to 973,479
_RS04580
RS_RS04585: RS_RS04585 - MetQ/NlpA family ABC transporter substrate-binding protein, at 973,512 to 974,312
_RS04585
Position (kb) 971
972
973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 970.893 kb on + strand, within RS_RS04570 at 970.893 kb on + strand, within RS_RS04570 at 970.974 kb on + strand, within RS_RS04570 at 970.975 kb on - strand, within RS_RS04570 at 970.975 kb on - strand, within RS_RS04570 at 970.975 kb on - strand, within RS_RS04570 at 971.334 kb on + strand, within RS_RS04570 at 971.566 kb on - strand at 971.623 kb on + strand at 971.623 kb on + strand at 971.624 kb on - strand at 971.624 kb on - strand at 971.624 kb on - strand at 971.693 kb on + strand at 971.693 kb on + strand at 971.693 kb on + strand at 971.694 kb on - strand at 971.694 kb on - strand at 971.694 kb on - strand at 971.706 kb on - strand at 971.710 kb on + strand at 971.729 kb on + strand at 971.774 kb on + strand at 971.774 kb on + strand at 971.775 kb on - strand at 971.778 kb on + strand at 971.778 kb on + strand at 971.779 kb on - strand at 971.779 kb on - strand at 972.084 kb on + strand, within RS_RS04575 at 972.084 kb on + strand, within RS_RS04575 at 972.085 kb on - strand, within RS_RS04575 at 973.090 kb on - strand, within RS_RS04580 at 973.228 kb on + strand, within RS_RS04580 at 973.229 kb on - strand, within RS_RS04580 at 973.707 kb on + strand, within RS_RS04585 at 973.758 kb on + strand, within RS_RS04585
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 970,893 + RS_RS04570 0.20 -1.2 970,893 + RS_RS04570 0.20 +1.3 970,974 + RS_RS04570 0.29 -1.0 970,975 - RS_RS04570 0.29 -3.9 970,975 - RS_RS04570 0.29 -2.4 970,975 - RS_RS04570 0.29 +0.5 971,334 + RS_RS04570 0.68 -2.5 971,566 - +0.4 971,623 + -1.0 971,623 + -0.7 971,624 - -1.6 971,624 - +0.6 971,624 - -0.3 971,693 + -2.3 971,693 + -3.8 971,693 + -0.6 971,694 - +0.8 971,694 - -0.4 971,694 - +1.1 971,706 - -1.6 971,710 + +1.1 971,729 + +0.6 971,774 + +0.6 971,774 + +0.3 971,775 - +0.7 971,778 + +1.3 971,778 + +2.0 971,779 - -0.4 971,779 - -0.5 972,084 + RS_RS04575 0.28 -3.9 972,084 + RS_RS04575 0.28 +0.3 972,085 - RS_RS04575 0.29 -2.0 973,090 - RS_RS04580 0.40 +0.3 973,228 + RS_RS04580 0.61 +1.3 973,229 - RS_RS04580 0.62 -0.5 973,707 + RS_RS04585 0.24 -0.1 973,758 + RS_RS04585 0.31 +1.3
Or see this region's nucleotide sequence