Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04035 and RS_RS04040 are separated by 74 nucleotides RS_RS04040 and RS_RS04045 are separated by 108 nucleotides
RS_RS04035: RS_RS04035 - serine protease, at 850,252 to 851,664
_RS04035
RS_RS04040: RS_RS04040 - LysR family transcriptional regulator, at 851,739 to 852,647
_RS04040
RS_RS04045: RS_RS04045 - MFS transporter, at 852,756 to 853,976
_RS04045
Position (kb) 851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 850.745 kb on + strand, within RS_RS04035 at 850.746 kb on - strand, within RS_RS04035 at 850.826 kb on + strand, within RS_RS04035 at 850.827 kb on - strand, within RS_RS04035 at 850.827 kb on - strand, within RS_RS04035 at 850.932 kb on + strand, within RS_RS04035 at 851.328 kb on - strand, within RS_RS04035 at 851.336 kb on + strand, within RS_RS04035 at 851.336 kb on + strand, within RS_RS04035 at 851.336 kb on + strand, within RS_RS04035 at 851.336 kb on + strand, within RS_RS04035 at 851.336 kb on + strand, within RS_RS04035 at 851.378 kb on + strand, within RS_RS04035 at 851.378 kb on + strand, within RS_RS04035 at 851.378 kb on + strand, within RS_RS04035 at 851.378 kb on + strand, within RS_RS04035 at 851.379 kb on - strand, within RS_RS04035 at 851.520 kb on - strand, within RS_RS04035 at 851.681 kb on + strand at 851.710 kb on - strand at 851.710 kb on - strand at 851.741 kb on - strand at 851.912 kb on - strand, within RS_RS04040 at 851.912 kb on - strand, within RS_RS04040 at 852.055 kb on + strand, within RS_RS04040 at 852.448 kb on + strand, within RS_RS04040 at 852.449 kb on - strand, within RS_RS04040 at 852.682 kb on + strand at 852.713 kb on + strand at 852.713 kb on + strand at 852.713 kb on + strand at 852.713 kb on + strand at 852.714 kb on - strand at 852.714 kb on - strand at 852.739 kb on - strand at 852.739 kb on - strand at 852.963 kb on + strand, within RS_RS04045 at 852.964 kb on - strand, within RS_RS04045 at 852.964 kb on - strand, within RS_RS04045 at 852.964 kb on - strand, within RS_RS04045 at 853.470 kb on + strand, within RS_RS04045 at 853.642 kb on - strand, within RS_RS04045
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 850,745 + RS_RS04035 0.35 +0.3 850,746 - RS_RS04035 0.35 +0.2 850,826 + RS_RS04035 0.41 -0.4 850,827 - RS_RS04035 0.41 -0.6 850,827 - RS_RS04035 0.41 +2.9 850,932 + RS_RS04035 0.48 -0.2 851,328 - RS_RS04035 0.76 -0.2 851,336 + RS_RS04035 0.77 -0.4 851,336 + RS_RS04035 0.77 -0.9 851,336 + RS_RS04035 0.77 +1.8 851,336 + RS_RS04035 0.77 +3.6 851,336 + RS_RS04035 0.77 -0.6 851,378 + RS_RS04035 0.80 +0.7 851,378 + RS_RS04035 0.80 -0.2 851,378 + RS_RS04035 0.80 +0.9 851,378 + RS_RS04035 0.80 +0.2 851,379 - RS_RS04035 0.80 +0.6 851,520 - RS_RS04035 0.90 +0.1 851,681 + -0.0 851,710 - -0.9 851,710 - +1.7 851,741 - +3.1 851,912 - RS_RS04040 0.19 -0.7 851,912 - RS_RS04040 0.19 +0.8 852,055 + RS_RS04040 0.35 -1.3 852,448 + RS_RS04040 0.78 -0.5 852,449 - RS_RS04040 0.78 +0.1 852,682 + -1.5 852,713 + -0.3 852,713 + +0.4 852,713 + -0.5 852,713 + +0.3 852,714 - +1.0 852,714 - -1.0 852,739 - -1.2 852,739 - +0.3 852,963 + RS_RS04045 0.17 +0.2 852,964 - RS_RS04045 0.17 -1.1 852,964 - RS_RS04045 0.17 -0.5 852,964 - RS_RS04045 0.17 -2.0 853,470 + RS_RS04045 0.58 +0.0 853,642 - RS_RS04045 0.73 +0.9
Or see this region's nucleotide sequence