Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03825 and RS_RS03830 are separated by 34 nucleotides RS_RS03830 and RS_RS03835 are separated by 159 nucleotides RS_RS03835 and RS_RS03840 are separated by 67 nucleotides RS_RS03840 and RS_RS03845 are separated by 16 nucleotides
RS_RS03825: RS_RS03825 - kynureninase, at 802,672 to 803,925
_RS03825
RS_RS03830: RS_RS03830 - kynurenine formamidase, at 803,960 to 804,589
_RS03830
RS_RS03835: RS_RS03835 - Lrp/AsnC family transcriptional regulator, at 804,749 to 805,279
_RS03835
RS_RS03840: RS_RS03840 - DUF3079 domain-containing protein, at 805,347 to 805,553
_RS03840
RS_RS03845: RS_RS03845 - flavin reductase, at 805,570 to 806,145
_RS03845
Position (kb) 803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 803.117 kb on + strand, within RS_RS03825 at 803.118 kb on - strand, within RS_RS03825 at 803.118 kb on - strand, within RS_RS03825 at 803.240 kb on + strand, within RS_RS03825 at 803.241 kb on - strand, within RS_RS03825 at 803.241 kb on - strand, within RS_RS03825 at 803.246 kb on + strand, within RS_RS03825 at 803.246 kb on + strand, within RS_RS03825 at 803.247 kb on - strand, within RS_RS03825 at 803.247 kb on - strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.379 kb on - strand, within RS_RS03825 at 803.397 kb on - strand, within RS_RS03825 at 803.523 kb on - strand, within RS_RS03825 at 803.523 kb on - strand, within RS_RS03825 at 803.831 kb on + strand at 803.831 kb on + strand at 804.039 kb on + strand, within RS_RS03830 at 804.258 kb on + strand, within RS_RS03830 at 804.258 kb on + strand, within RS_RS03830 at 804.367 kb on - strand, within RS_RS03830 at 804.411 kb on + strand, within RS_RS03830 at 804.581 kb on - strand at 804.581 kb on - strand at 805.041 kb on - strand, within RS_RS03835 at 805.064 kb on + strand, within RS_RS03835 at 805.100 kb on + strand, within RS_RS03835 at 805.128 kb on - strand, within RS_RS03835 at 805.128 kb on - strand, within RS_RS03835 at 805.128 kb on - strand, within RS_RS03835 at 805.314 kb on + strand at 805.410 kb on + strand, within RS_RS03840 at 805.410 kb on + strand, within RS_RS03840 at 805.410 kb on + strand, within RS_RS03840 at 805.410 kb on + strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 803,117 + RS_RS03825 0.35 -0.0 803,118 - RS_RS03825 0.36 +0.3 803,118 - RS_RS03825 0.36 -0.1 803,240 + RS_RS03825 0.45 -1.0 803,241 - RS_RS03825 0.45 +0.7 803,241 - RS_RS03825 0.45 -0.7 803,246 + RS_RS03825 0.46 -1.5 803,246 + RS_RS03825 0.46 -0.9 803,247 - RS_RS03825 0.46 +0.7 803,247 - RS_RS03825 0.46 -0.2 803,378 + RS_RS03825 0.56 +1.3 803,378 + RS_RS03825 0.56 +0.7 803,378 + RS_RS03825 0.56 +0.1 803,378 + RS_RS03825 0.56 -0.7 803,379 - RS_RS03825 0.56 +0.6 803,397 - RS_RS03825 0.58 +1.3 803,523 - RS_RS03825 0.68 -1.3 803,523 - RS_RS03825 0.68 -1.5 803,831 + +1.3 803,831 + +2.9 804,039 + RS_RS03830 0.13 +1.3 804,258 + RS_RS03830 0.47 -0.7 804,258 + RS_RS03830 0.47 +0.1 804,367 - RS_RS03830 0.65 +0.9 804,411 + RS_RS03830 0.72 -3.3 804,581 - +1.3 804,581 - +3.9 805,041 - RS_RS03835 0.55 -0.8 805,064 + RS_RS03835 0.59 -1.2 805,100 + RS_RS03835 0.66 +0.7 805,128 - RS_RS03835 0.71 -0.7 805,128 - RS_RS03835 0.71 +1.3 805,128 - RS_RS03835 0.71 -1.0 805,314 + +1.3 805,410 + RS_RS03840 0.30 -0.5 805,410 + RS_RS03840 0.30 -0.4 805,410 + RS_RS03840 0.30 -0.1 805,410 + RS_RS03840 0.30 -0.0 805,411 - RS_RS03840 0.31 +0.1 805,411 - RS_RS03840 0.31 -1.3 805,411 - RS_RS03840 0.31 -1.3 805,411 - RS_RS03840 0.31 +1.0 805,411 - RS_RS03840 0.31 -1.5 805,411 - RS_RS03840 0.31 -0.7 805,411 - RS_RS03840 0.31 -1.2 805,411 - RS_RS03840 0.31 +1.3
Or see this region's nucleotide sequence