Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03035

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03030 and RS_RS03035 are separated by 205 nucleotidesRS_RS03035 and RS_RS03040 are separated by 23 nucleotidesRS_RS03040 and RS_RS03045 are separated by 101 nucleotides RS_RS03030: RS_RS03030 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 651,399 to 652,505 _RS03030 RS_RS03035: RS_RS03035 - methyl-accepting chemotaxis protein, at 652,711 to 654,513 _RS03035 RS_RS03040: RS_RS03040 - glutathione S-transferase family protein, at 654,537 to 655,178 _RS03040 RS_RS03045: RS_RS03045 - hypothetical protein, at 655,280 to 655,526 _RS03045 Position (kb) 652 653 654 655Strain fitness (log2 ratio) -2 -1 0 1 2at 651.734 kb on - strand, within RS_RS03030at 652.102 kb on + strand, within RS_RS03030at 652.103 kb on - strand, within RS_RS03030at 652.103 kb on - strand, within RS_RS03030at 652.241 kb on + strand, within RS_RS03030at 652.242 kb on - strand, within RS_RS03030at 652.242 kb on - strand, within RS_RS03030at 652.243 kb on + strand, within RS_RS03030at 652.244 kb on - strand, within RS_RS03030at 652.244 kb on - strand, within RS_RS03030at 652.372 kb on + strand, within RS_RS03030at 652.372 kb on + strand, within RS_RS03030at 652.373 kb on - strand, within RS_RS03030at 652.373 kb on - strand, within RS_RS03030at 652.373 kb on - strand, within RS_RS03030at 652.376 kb on - strand, within RS_RS03030at 652.376 kb on - strand, within RS_RS03030at 652.376 kb on - strand, within RS_RS03030at 652.556 kb on - strandat 652.556 kb on - strandat 652.556 kb on - strandat 652.690 kb on + strandat 652.690 kb on + strandat 652.690 kb on + strandat 652.993 kb on + strand, within RS_RS03035at 652.993 kb on + strand, within RS_RS03035at 653.017 kb on + strand, within RS_RS03035at 653.018 kb on - strand, within RS_RS03035at 653.018 kb on - strand, within RS_RS03035at 653.054 kb on - strand, within RS_RS03035at 653.077 kb on + strand, within RS_RS03035at 653.122 kb on + strand, within RS_RS03035at 653.122 kb on + strand, within RS_RS03035at 653.122 kb on + strand, within RS_RS03035at 654.628 kb on + strand, within RS_RS03040at 654.628 kb on + strand, within RS_RS03040at 654.734 kb on - strand, within RS_RS03040at 654.865 kb on + strand, within RS_RS03040at 654.865 kb on + strand, within RS_RS03040at 654.886 kb on + strand, within RS_RS03040at 654.887 kb on - strand, within RS_RS03040at 654.937 kb on + strand, within RS_RS03040at 654.938 kb on - strand, within RS_RS03040at 654.938 kb on - strand, within RS_RS03040at 654.952 kb on + strand, within RS_RS03040at 654.953 kb on - strand, within RS_RS03040at 654.958 kb on + strand, within RS_RS03040at 654.985 kb on - strand, within RS_RS03040at 655.036 kb on + strand, within RS_RS03040at 655.102 kb on - strand, within RS_RS03040at 655.151 kb on - strandat 655.151 kb on - strandat 655.212 kb on + strandat 655.212 kb on + strandat 655.213 kb on - strandat 655.213 kb on - strandat 655.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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651,734 - RS_RS03030 0.30 +1.4
652,102 + RS_RS03030 0.64 +0.1
652,103 - RS_RS03030 0.64 -0.2
652,103 - RS_RS03030 0.64 +1.4
652,241 + RS_RS03030 0.76 +0.3
652,242 - RS_RS03030 0.76 -1.8
652,242 - RS_RS03030 0.76 -0.4
652,243 + RS_RS03030 0.76 -0.2
652,244 - RS_RS03030 0.76 +1.4
652,244 - RS_RS03030 0.76 +1.4
652,372 + RS_RS03030 0.88 -0.4
652,372 + RS_RS03030 0.88 -0.6
652,373 - RS_RS03030 0.88 -0.2
652,373 - RS_RS03030 0.88 -1.8
652,373 - RS_RS03030 0.88 +0.8
652,376 - RS_RS03030 0.88 +0.2
652,376 - RS_RS03030 0.88 +1.4
652,376 - RS_RS03030 0.88 +0.1
652,556 - -1.5
652,556 - +0.4
652,556 - +1.0
652,690 + +1.4
652,690 + +0.5
652,690 + +1.1
652,993 + RS_RS03035 0.16 -0.1
652,993 + RS_RS03035 0.16 -0.5
653,017 + RS_RS03035 0.17 -1.4
653,018 - RS_RS03035 0.17 +0.6
653,018 - RS_RS03035 0.17 -1.5
653,054 - RS_RS03035 0.19 +2.2
653,077 + RS_RS03035 0.20 +1.2
653,122 + RS_RS03035 0.23 +0.1
653,122 + RS_RS03035 0.23 +0.1
653,122 + RS_RS03035 0.23 +0.5
654,628 + RS_RS03040 0.14 -0.7
654,628 + RS_RS03040 0.14 +1.4
654,734 - RS_RS03040 0.31 -1.8
654,865 + RS_RS03040 0.51 +1.5
654,865 + RS_RS03040 0.51 +1.4
654,886 + RS_RS03040 0.54 +0.2
654,887 - RS_RS03040 0.55 -1.8
654,937 + RS_RS03040 0.62 +1.4
654,938 - RS_RS03040 0.62 -0.9
654,938 - RS_RS03040 0.62 -0.8
654,952 + RS_RS03040 0.65 -1.4
654,953 - RS_RS03040 0.65 -0.2
654,958 + RS_RS03040 0.66 +0.3
654,985 - RS_RS03040 0.70 -1.4
655,036 + RS_RS03040 0.78 -1.3
655,102 - RS_RS03040 0.88 -0.0
655,151 - +1.2
655,151 - -1.1
655,212 + +0.4
655,212 + -0.1
655,213 - +0.3
655,213 - -1.6
655,213 - +1.4

Or see this region's nucleotide sequence