Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02810 and RS_RS02815 are separated by 14 nucleotides RS_RS02815 and RS_RS02820 overlap by 8 nucleotides RS_RS02820 and RS_RS02825 are separated by 41 nucleotides RS_RS02825 and RS_RS02830 are separated by 39 nucleotides
RS_RS02810: RS_RS02810 - peptidase M48, at 605,859 to 607,544
_RS02810
RS_RS02815: RS_RS02815 - DUF2946 domain-containing protein, at 607,559 to 608,146
_RS02815
RS_RS02820: RS_RS02820 - alpha/beta hydrolase, at 608,139 to 609,254
_RS02820
RS_RS02825: RS_RS02825 - hypothetical protein, at 609,296 to 609,736
_RS02825
RS_RS02830: RS_RS02830 - lipopolysaccharide heptosyltransferase II, at 609,776 to 610,801
_RS02830
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 607.211 kb on + strand, within RS_RS02810 at 607.211 kb on + strand, within RS_RS02810 at 607.212 kb on - strand, within RS_RS02810 at 607.216 kb on - strand, within RS_RS02810 at 607.263 kb on + strand, within RS_RS02810 at 607.263 kb on + strand, within RS_RS02810 at 607.330 kb on - strand, within RS_RS02810 at 607.456 kb on - strand at 607.457 kb on + strand at 607.543 kb on - strand at 607.543 kb on - strand at 608.464 kb on + strand, within RS_RS02820 at 608.464 kb on + strand, within RS_RS02820 at 608.465 kb on - strand, within RS_RS02820 at 608.620 kb on + strand, within RS_RS02820 at 608.620 kb on + strand, within RS_RS02820 at 608.860 kb on + strand, within RS_RS02820 at 608.861 kb on - strand, within RS_RS02820 at 608.861 kb on - strand, within RS_RS02820 at 608.962 kb on + strand, within RS_RS02820 at 609.001 kb on - strand, within RS_RS02820 at 609.408 kb on + strand, within RS_RS02825 at 609.408 kb on + strand, within RS_RS02825 at 609.408 kb on + strand, within RS_RS02825 at 609.409 kb on - strand, within RS_RS02825 at 609.423 kb on + strand, within RS_RS02825 at 609.423 kb on + strand, within RS_RS02825 at 609.423 kb on + strand, within RS_RS02825 at 609.424 kb on - strand, within RS_RS02825 at 609.424 kb on - strand, within RS_RS02825 at 609.777 kb on + strand at 609.778 kb on - strand at 609.908 kb on - strand, within RS_RS02830 at 610.236 kb on + strand, within RS_RS02830
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 607,211 + RS_RS02810 0.80 -0.9 607,211 + RS_RS02810 0.80 +0.4 607,212 - RS_RS02810 0.80 -2.9 607,216 - RS_RS02810 0.80 +0.3 607,263 + RS_RS02810 0.83 -0.2 607,263 + RS_RS02810 0.83 +0.7 607,330 - RS_RS02810 0.87 -0.2 607,456 - -0.6 607,457 + +2.2 607,543 - +0.6 607,543 - +0.4 608,464 + RS_RS02820 0.29 +3.0 608,464 + RS_RS02820 0.29 +0.4 608,465 - RS_RS02820 0.29 +0.3 608,620 + RS_RS02820 0.43 -0.6 608,620 + RS_RS02820 0.43 +0.2 608,860 + RS_RS02820 0.65 -0.2 608,861 - RS_RS02820 0.65 -1.2 608,861 - RS_RS02820 0.65 +1.8 608,962 + RS_RS02820 0.74 +0.8 609,001 - RS_RS02820 0.77 -0.6 609,408 + RS_RS02825 0.25 -0.9 609,408 + RS_RS02825 0.25 +0.2 609,408 + RS_RS02825 0.25 -2.1 609,409 - RS_RS02825 0.26 +0.5 609,423 + RS_RS02825 0.29 +0.3 609,423 + RS_RS02825 0.29 -0.4 609,423 + RS_RS02825 0.29 -0.6 609,424 - RS_RS02825 0.29 +1.7 609,424 - RS_RS02825 0.29 +0.4 609,777 + +0.4 609,778 - +1.5 609,908 - RS_RS02830 0.13 -4.3 610,236 + RS_RS02830 0.45 +1.4
Or see this region's nucleotide sequence