Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02205 and RS_RS02210 are separated by 25 nucleotides RS_RS02210 and RS_RS02215 are separated by 16 nucleotides RS_RS02215 and RS_RS02220 are separated by 226 nucleotides
RS_RS02205: RS_RS02205 - peptidase C39, at 473,214 to 473,918
_RS02205
RS_RS02210: RS_RS02210 - hypothetical protein, at 473,944 to 474,507
_RS02210
RS_RS02215: RS_RS02215 - acetate kinase, at 474,524 to 475,864
_RS02215
RS_RS02220: RS_RS02220 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 476,091 to 476,924
_RS02220
Position (kb) 474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 474.077 kb on + strand, within RS_RS02210 at 474.077 kb on + strand, within RS_RS02210 at 474.078 kb on - strand, within RS_RS02210 at 474.078 kb on - strand, within RS_RS02210 at 474.078 kb on - strand, within RS_RS02210 at 474.187 kb on + strand, within RS_RS02210 at 474.526 kb on - strand at 474.526 kb on - strand at 474.627 kb on + strand at 474.913 kb on - strand, within RS_RS02215 at 475.077 kb on + strand, within RS_RS02215 at 475.077 kb on + strand, within RS_RS02215 at 475.078 kb on - strand, within RS_RS02215 at 475.078 kb on - strand, within RS_RS02215 at 475.078 kb on - strand, within RS_RS02215 at 475.078 kb on - strand, within RS_RS02215 at 475.221 kb on + strand, within RS_RS02215 at 475.222 kb on - strand, within RS_RS02215 at 475.228 kb on - strand, within RS_RS02215 at 475.389 kb on + strand, within RS_RS02215 at 475.950 kb on + strand at 475.951 kb on - strand at 475.951 kb on - strand at 475.953 kb on - strand at 476.011 kb on + strand at 476.092 kb on + strand at 476.177 kb on + strand, within RS_RS02220 at 476.178 kb on - strand, within RS_RS02220 at 476.179 kb on + strand, within RS_RS02220 at 476.291 kb on - strand, within RS_RS02220 at 476.330 kb on - strand, within RS_RS02220 at 476.761 kb on + strand, within RS_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 474,077 + RS_RS02210 0.24 +0.0 474,077 + RS_RS02210 0.24 -0.7 474,078 - RS_RS02210 0.24 +1.0 474,078 - RS_RS02210 0.24 -0.6 474,078 - RS_RS02210 0.24 +0.7 474,187 + RS_RS02210 0.43 +0.7 474,526 - -1.2 474,526 - +0.2 474,627 + +0.7 474,913 - RS_RS02215 0.29 -1.0 475,077 + RS_RS02215 0.41 +0.2 475,077 + RS_RS02215 0.41 +0.4 475,078 - RS_RS02215 0.41 +0.1 475,078 - RS_RS02215 0.41 -0.5 475,078 - RS_RS02215 0.41 -0.1 475,078 - RS_RS02215 0.41 +3.0 475,221 + RS_RS02215 0.52 -0.5 475,222 - RS_RS02215 0.52 +1.2 475,228 - RS_RS02215 0.52 -0.2 475,389 + RS_RS02215 0.65 -0.8 475,950 + -2.5 475,951 - -0.2 475,951 - +0.5 475,953 - +1.5 476,011 + +3.9 476,092 + +1.8 476,177 + RS_RS02220 0.10 +0.5 476,178 - RS_RS02220 0.10 -0.5 476,179 + RS_RS02220 0.11 -2.1 476,291 - RS_RS02220 0.24 -0.5 476,330 - RS_RS02220 0.29 +1.5 476,761 + RS_RS02220 0.80 +1.5
Or see this region's nucleotide sequence