Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02180 and RS_RS02185 are separated by 35 nucleotides RS_RS02185 and RS_RS02190 are separated by 230 nucleotides RS_RS02190 and RS_RS02195 are separated by 683 nucleotides
RS_RS02180: RS_RS02180 - hypothetical protein, at 467,372 to 468,175
_RS02180
RS_RS02185: RS_RS02185 - gluconate kinase, at 468,211 to 468,720
_RS02185
RS_RS02190: RS_RS02190 - AMP-binding protein, at 468,951 to 470,666
_RS02190
RS_RS02195: RS_RS02195 - hypothetical protein, at 471,350 to 472,630
_RS02195
Position (kb) 468
469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2 at 467.964 kb on - strand, within RS_RS02180 at 467.978 kb on + strand, within RS_RS02180 at 467.978 kb on + strand, within RS_RS02180 at 468.530 kb on + strand, within RS_RS02185 at 468.530 kb on + strand, within RS_RS02185 at 468.531 kb on - strand, within RS_RS02185 at 468.755 kb on + strand at 468.755 kb on + strand at 469.290 kb on + strand, within RS_RS02190 at 469.734 kb on + strand, within RS_RS02190 at 469.735 kb on - strand, within RS_RS02190 at 470.199 kb on + strand, within RS_RS02190 at 470.218 kb on - strand, within RS_RS02190 at 470.442 kb on + strand, within RS_RS02190 at 470.538 kb on + strand at 470.538 kb on + strand at 470.539 kb on - strand at 470.948 kb on + strand at 470.948 kb on + strand at 470.948 kb on + strand at 470.948 kb on + strand at 470.979 kb on + strand at 470.979 kb on + strand at 470.979 kb on + strand at 471.105 kb on + strand at 471.150 kb on + strand at 471.150 kb on + strand at 471.150 kb on + strand at 471.151 kb on - strand at 471.151 kb on - strand at 471.151 kb on - strand at 471.151 kb on - strand at 471.641 kb on - strand, within RS_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 467,964 - RS_RS02180 0.74 +0.7 467,978 + RS_RS02180 0.75 +0.5 467,978 + RS_RS02180 0.75 +1.5 468,530 + RS_RS02185 0.63 +0.5 468,530 + RS_RS02185 0.63 +1.3 468,531 - RS_RS02185 0.63 -0.6 468,755 + -1.3 468,755 + +1.1 469,290 + RS_RS02190 0.20 -1.0 469,734 + RS_RS02190 0.46 -1.8 469,735 - RS_RS02190 0.46 -0.5 470,199 + RS_RS02190 0.73 -0.0 470,218 - RS_RS02190 0.74 +0.4 470,442 + RS_RS02190 0.87 +0.6 470,538 + -0.0 470,538 + -0.5 470,539 - -0.3 470,948 + +0.1 470,948 + -0.2 470,948 + -0.8 470,948 + +1.5 470,979 + +1.5 470,979 + -1.0 470,979 + +1.2 471,105 + +0.2 471,150 + +2.6 471,150 + +0.5 471,150 + -0.4 471,151 - -2.3 471,151 - -1.6 471,151 - +1.7 471,151 - -0.4 471,641 - RS_RS02195 0.23 -0.7
Or see this region's nucleotide sequence