Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02110

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02100 and RS_RS02105 are separated by 29 nucleotidesRS_RS02105 and RS_RS02110 overlap by 4 nucleotidesRS_RS02110 and RS_RS02115 overlap by 4 nucleotides RS_RS02100: RS_RS02100 - hypothetical protein, at 452,296 to 452,553 _RS02100 RS_RS02105: RS_RS02105 - hypothetical protein, at 452,583 to 453,092 _RS02105 RS_RS02110: RS_RS02110 - 3-oxoacyl-ACP synthase, at 453,089 to 453,910 _RS02110 RS_RS02115: RS_RS02115 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 453,907 to 455,124 _RS02115 Position (kb) 453 454Strain fitness (log2 ratio) -1 0 1 2at 452.117 kb on + strandat 452.173 kb on + strandat 452.184 kb on - strandat 452.679 kb on + strand, within RS_RS02105at 454.259 kb on + strand, within RS_RS02115at 454.259 kb on + strand, within RS_RS02115at 454.259 kb on + strand, within RS_RS02115at 454.260 kb on - strand, within RS_RS02115

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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452,117 + -0.7
452,173 + +0.0
452,184 - -1.7
452,679 + RS_RS02105 0.19 +2.7
454,259 + RS_RS02115 0.29 -1.3
454,259 + RS_RS02115 0.29 +2.1
454,259 + RS_RS02115 0.29 -0.5
454,260 - RS_RS02115 0.29 +1.5

Or see this region's nucleotide sequence