Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01370 and RS_RS01375 are separated by 168 nucleotides RS_RS01375 and RS_RS01380 are separated by 160 nucleotides
RS_RS01370: RS_RS01370 - isovaleryl-CoA dehydrogenase, at 312,256 to 313,437
_RS01370
RS_RS01375: RS_RS01375 - MerR family DNA-binding transcriptional regulator, at 313,606 to 314,103
_RS01375
RS_RS01380: RS_RS01380 - Zn-dependent hydrolase, at 314,264 to 315,343
_RS01380
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 312.629 kb on + strand, within RS_RS01370 at 312.977 kb on + strand, within RS_RS01370 at 312.978 kb on - strand, within RS_RS01370 at 312.978 kb on - strand, within RS_RS01370 at 313.091 kb on + strand, within RS_RS01370 at 313.091 kb on + strand, within RS_RS01370 at 313.091 kb on + strand, within RS_RS01370 at 313.091 kb on + strand, within RS_RS01370 at 313.091 kb on + strand, within RS_RS01370 at 313.224 kb on - strand, within RS_RS01370 at 313.244 kb on + strand, within RS_RS01370 at 313.244 kb on + strand, within RS_RS01370 at 313.245 kb on - strand, within RS_RS01370 at 313.808 kb on + strand, within RS_RS01375 at 313.901 kb on + strand, within RS_RS01375 at 313.901 kb on + strand, within RS_RS01375 at 313.902 kb on - strand, within RS_RS01375 at 313.962 kb on - strand, within RS_RS01375 at 313.962 kb on - strand, within RS_RS01375 at 314.103 kb on + strand at 314.103 kb on + strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.164 kb on + strand at 314.196 kb on + strand at 314.196 kb on + strand at 314.245 kb on + strand at 314.352 kb on - strand at 314.352 kb on - strand at 314.772 kb on - strand, within RS_RS01380 at 314.772 kb on - strand, within RS_RS01380 at 314.772 kb on - strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.775 kb on - strand, within RS_RS01380 at 314.775 kb on - strand, within RS_RS01380 at 314.904 kb on - strand, within RS_RS01380 at 315.011 kb on + strand, within RS_RS01380 at 315.032 kb on + strand, within RS_RS01380 at 315.032 kb on + strand, within RS_RS01380 at 315.033 kb on - strand, within RS_RS01380 at 315.033 kb on - strand, within RS_RS01380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 312,629 + RS_RS01370 0.32 -1.0 312,977 + RS_RS01370 0.61 -0.4 312,978 - RS_RS01370 0.61 +1.6 312,978 - RS_RS01370 0.61 -1.3 313,091 + RS_RS01370 0.71 +1.6 313,091 + RS_RS01370 0.71 -2.0 313,091 + RS_RS01370 0.71 -1.5 313,091 + RS_RS01370 0.71 +0.3 313,091 + RS_RS01370 0.71 +0.6 313,224 - RS_RS01370 0.82 -0.2 313,244 + RS_RS01370 0.84 -1.0 313,244 + RS_RS01370 0.84 -0.0 313,245 - RS_RS01370 0.84 +0.2 313,808 + RS_RS01375 0.41 +1.7 313,901 + RS_RS01375 0.59 +1.8 313,901 + RS_RS01375 0.59 -0.0 313,902 - RS_RS01375 0.59 +0.7 313,962 - RS_RS01375 0.71 +0.3 313,962 - RS_RS01375 0.71 -0.3 314,103 + +0.6 314,103 + +1.0 314,104 - -1.1 314,104 - +0.4 314,104 - -0.1 314,104 - -2.0 314,104 - +1.0 314,104 - -0.8 314,104 - -0.6 314,164 + +0.9 314,196 + +1.6 314,196 + -0.7 314,245 + -1.5 314,352 - +0.6 314,352 - +0.2 314,772 - RS_RS01380 0.47 -2.2 314,772 - RS_RS01380 0.47 -0.3 314,772 - RS_RS01380 0.47 +1.6 314,774 + RS_RS01380 0.47 -0.6 314,774 + RS_RS01380 0.47 -1.3 314,774 + RS_RS01380 0.47 +0.0 314,775 - RS_RS01380 0.47 -0.3 314,775 - RS_RS01380 0.47 -1.8 314,904 - RS_RS01380 0.59 -0.5 315,011 + RS_RS01380 0.69 +1.6 315,032 + RS_RS01380 0.71 +0.9 315,032 + RS_RS01380 0.71 +0.6 315,033 - RS_RS01380 0.71 -1.1 315,033 - RS_RS01380 0.71 -0.4
Or see this region's nucleotide sequence