Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01155 and RS_RS01160 are separated by 173 nucleotides RS_RS01160 and RS_RS01165 are separated by 355 nucleotides
RS_RS01155: RS_RS01155 - DUF427 domain-containing protein, at 257,727 to 258,083
_RS01155
RS_RS01160: RS_RS01160 - hypothetical protein, at 258,257 to 259,327
_RS01160
RS_RS01165: RS_RS01165 - methylmalonyl-CoA mutase, at 259,683 to 262,982
_RS01165
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 257.263 kb on - strand at 257.687 kb on + strand at 257.687 kb on + strand at 257.687 kb on + strand at 257.687 kb on + strand at 257.688 kb on - strand at 257.738 kb on + strand at 257.739 kb on - strand at 257.778 kb on + strand, within RS_RS01155 at 257.779 kb on - strand, within RS_RS01155 at 257.779 kb on - strand, within RS_RS01155 at 257.809 kb on + strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.810 kb on - strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.857 kb on + strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.858 kb on - strand, within RS_RS01155 at 257.860 kb on + strand, within RS_RS01155 at 257.944 kb on + strand, within RS_RS01155 at 257.944 kb on + strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.945 kb on - strand, within RS_RS01155 at 257.946 kb on - strand, within RS_RS01155 at 258.007 kb on + strand, within RS_RS01155 at 258.144 kb on + strand at 258.144 kb on + strand at 258.144 kb on + strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.145 kb on - strand at 258.259 kb on - strand at 258.339 kb on + strand at 258.340 kb on - strand at 258.340 kb on - strand at 258.494 kb on - strand, within RS_RS01160 at 258.495 kb on + strand, within RS_RS01160 at 258.495 kb on + strand, within RS_RS01160 at 258.496 kb on - strand, within RS_RS01160 at 258.870 kb on + strand, within RS_RS01160 at 258.871 kb on - strand, within RS_RS01160 at 258.871 kb on - strand, within RS_RS01160 at 258.871 kb on - strand, within RS_RS01160 at 258.926 kb on + strand, within RS_RS01160 at 259.431 kb on + strand at 259.431 kb on + strand at 259.441 kb on + strand at 259.441 kb on + strand at 259.441 kb on + strand at 259.442 kb on - strand at 259.495 kb on + strand at 259.496 kb on - strand at 259.596 kb on + strand at 259.932 kb on + strand at 259.932 kb on + strand at 259.933 kb on - strand at 259.954 kb on - strand at 259.962 kb on + strand at 259.962 kb on + strand at 259.963 kb on - strand at 259.963 kb on - strand at 259.963 kb on - strand at 260.064 kb on + strand, within RS_RS01165 at 260.082 kb on + strand, within RS_RS01165 at 260.082 kb on + strand, within RS_RS01165 at 260.082 kb on + strand, within RS_RS01165 at 260.082 kb on + strand, within RS_RS01165
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 257,263 - +0.8 257,687 + +1.1 257,687 + -0.9 257,687 + +1.6 257,687 + +2.2 257,688 - -0.0 257,738 + +1.7 257,739 - -0.3 257,778 + RS_RS01155 0.14 +0.8 257,779 - RS_RS01155 0.15 +0.2 257,779 - RS_RS01155 0.15 +0.1 257,809 + RS_RS01155 0.23 -0.1 257,810 - RS_RS01155 0.23 +1.4 257,810 - RS_RS01155 0.23 +0.2 257,810 - RS_RS01155 0.23 +1.6 257,810 - RS_RS01155 0.23 +0.2 257,857 + RS_RS01155 0.36 -0.4 257,857 + RS_RS01155 0.36 -1.1 257,857 + RS_RS01155 0.36 -0.4 257,857 + RS_RS01155 0.36 -0.8 257,858 - RS_RS01155 0.37 -0.7 257,858 - RS_RS01155 0.37 +1.1 257,858 - RS_RS01155 0.37 -0.9 257,858 - RS_RS01155 0.37 -0.7 257,860 + RS_RS01155 0.37 -0.1 257,944 + RS_RS01155 0.61 -1.1 257,944 + RS_RS01155 0.61 +0.6 257,945 - RS_RS01155 0.61 +0.5 257,945 - RS_RS01155 0.61 +1.6 257,945 - RS_RS01155 0.61 +0.1 257,945 - RS_RS01155 0.61 +0.4 257,946 - RS_RS01155 0.61 -0.4 258,007 + RS_RS01155 0.78 +0.4 258,144 + -0.5 258,144 + -1.0 258,144 + -0.4 258,145 - -0.7 258,145 - -1.0 258,145 - -0.3 258,145 - +1.2 258,145 - -1.1 258,145 - -1.1 258,259 - +1.6 258,339 + +2.2 258,340 - +2.7 258,340 - +1.1 258,494 - RS_RS01160 0.22 +2.0 258,495 + RS_RS01160 0.22 +2.2 258,495 + RS_RS01160 0.22 -0.1 258,496 - RS_RS01160 0.22 +1.9 258,870 + RS_RS01160 0.57 +2.0 258,871 - RS_RS01160 0.57 +1.7 258,871 - RS_RS01160 0.57 +3.1 258,871 - RS_RS01160 0.57 +2.6 258,926 + RS_RS01160 0.62 +2.7 259,431 + -0.2 259,431 + -0.7 259,441 + -0.6 259,441 + -2.0 259,441 + -1.0 259,442 - -0.4 259,495 + +0.2 259,496 - -0.0 259,596 + +2.1 259,932 + +2.6 259,932 + -1.7 259,933 - -2.1 259,954 - +0.6 259,962 + +1.6 259,962 + +0.4 259,963 - +0.6 259,963 - -2.0 259,963 - -2.3 260,064 + RS_RS01165 0.12 +0.2 260,082 + RS_RS01165 0.12 +4.9 260,082 + RS_RS01165 0.12 +0.0 260,082 + RS_RS01165 0.12 -2.3 260,082 + RS_RS01165 0.12 +1.6
Or see this region's nucleotide sequence