Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00960 and RS_RS00965 are separated by 45 nucleotides RS_RS00965 and RS_RS00970 are separated by 325 nucleotides
RS_RS00960: RS_RS00960 - alcohol dehydrogenase, at 215,117 to 216,154
_RS00960
RS_RS00965: RS_RS00965 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 216,200 to 218,017
_RS00965
RS_RS00970: RS_RS00970 - hypothetical protein, at 218,343 to 219,683
_RS00970
Position (kb) 216
217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.245 kb on + strand, within RS_RS00960 at 215.245 kb on + strand, within RS_RS00960 at 215.245 kb on + strand, within RS_RS00960 at 215.246 kb on - strand, within RS_RS00960 at 215.374 kb on + strand, within RS_RS00960 at 215.375 kb on - strand, within RS_RS00960 at 215.417 kb on + strand, within RS_RS00960 at 215.417 kb on + strand, within RS_RS00960 at 215.480 kb on + strand, within RS_RS00960 at 215.481 kb on - strand, within RS_RS00960 at 215.513 kb on + strand, within RS_RS00960 at 215.520 kb on + strand, within RS_RS00960 at 215.563 kb on + strand, within RS_RS00960 at 215.564 kb on - strand, within RS_RS00960 at 215.925 kb on + strand, within RS_RS00960 at 216.153 kb on - strand at 216.153 kb on - strand at 216.157 kb on + strand at 216.269 kb on + strand at 216.270 kb on - strand at 216.377 kb on + strand at 216.378 kb on - strand at 216.730 kb on + strand, within RS_RS00965 at 216.731 kb on - strand, within RS_RS00965 at 216.731 kb on - strand, within RS_RS00965 at 216.798 kb on + strand, within RS_RS00965 at 216.877 kb on + strand, within RS_RS00965 at 216.932 kb on + strand, within RS_RS00965 at 216.933 kb on - strand, within RS_RS00965 at 216.933 kb on - strand, within RS_RS00965 at 217.353 kb on - strand, within RS_RS00965 at 217.477 kb on + strand, within RS_RS00965 at 217.509 kb on + strand, within RS_RS00965 at 217.510 kb on - strand, within RS_RS00965 at 217.649 kb on + strand, within RS_RS00965 at 217.649 kb on + strand, within RS_RS00965 at 217.650 kb on - strand, within RS_RS00965 at 217.650 kb on - strand, within RS_RS00965 at 217.691 kb on + strand, within RS_RS00965 at 217.713 kb on - strand, within RS_RS00965 at 217.756 kb on + strand, within RS_RS00965 at 217.756 kb on + strand, within RS_RS00965 at 217.757 kb on - strand, within RS_RS00965 at 217.760 kb on + strand, within RS_RS00965 at 217.761 kb on - strand, within RS_RS00965 at 218.004 kb on + strand at 218.123 kb on - strand at 218.123 kb on - strand at 218.123 kb on - strand at 218.127 kb on - strand at 218.164 kb on + strand at 218.243 kb on + strand at 218.244 kb on - strand at 218.252 kb on - strand at 218.401 kb on + strand at 218.401 kb on + strand at 218.401 kb on + strand at 218.402 kb on - strand at 218.402 kb on - strand at 218.402 kb on - strand at 218.402 kb on - strand at 218.402 kb on - strand at 218.402 kb on - strand at 218.527 kb on - strand, within RS_RS00970 at 218.527 kb on - strand, within RS_RS00970 at 218.541 kb on + strand, within RS_RS00970 at 218.542 kb on - strand, within RS_RS00970 at 218.542 kb on - strand, within RS_RS00970 at 218.712 kb on + strand, within RS_RS00970 at 218.712 kb on + strand, within RS_RS00970 at 218.712 kb on + strand, within RS_RS00970 at 218.713 kb on - strand, within RS_RS00970 at 218.713 kb on - strand, within RS_RS00970 at 218.713 kb on - strand, within RS_RS00970 at 218.799 kb on + strand, within RS_RS00970 at 218.799 kb on + strand, within RS_RS00970 at 218.799 kb on + strand, within RS_RS00970 at 218.959 kb on - strand, within RS_RS00970 at 218.982 kb on + strand, within RS_RS00970 at 218.982 kb on + strand, within RS_RS00970 at 218.983 kb on - strand, within RS_RS00970 at 218.983 kb on - strand, within RS_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 215,245 + RS_RS00960 0.12 +0.0 215,245 + RS_RS00960 0.12 -1.1 215,245 + RS_RS00960 0.12 -0.8 215,246 - RS_RS00960 0.12 -2.0 215,374 + RS_RS00960 0.25 -0.4 215,375 - RS_RS00960 0.25 -0.0 215,417 + RS_RS00960 0.29 +1.6 215,417 + RS_RS00960 0.29 -0.4 215,480 + RS_RS00960 0.35 -0.2 215,481 - RS_RS00960 0.35 +0.6 215,513 + RS_RS00960 0.38 +0.7 215,520 + RS_RS00960 0.39 -0.4 215,563 + RS_RS00960 0.43 -0.4 215,564 - RS_RS00960 0.43 +1.6 215,925 + RS_RS00960 0.78 +0.3 216,153 - +1.6 216,153 - -0.1 216,157 + -1.4 216,269 + -0.2 216,270 - +0.4 216,377 + -0.0 216,378 - -0.1 216,730 + RS_RS00965 0.29 -2.6 216,731 - RS_RS00965 0.29 -1.8 216,731 - RS_RS00965 0.29 -2.0 216,798 + RS_RS00965 0.33 -1.2 216,877 + RS_RS00965 0.37 -0.9 216,932 + RS_RS00965 0.40 -2.1 216,933 - RS_RS00965 0.40 -0.3 216,933 - RS_RS00965 0.40 -1.2 217,353 - RS_RS00965 0.63 +0.3 217,477 + RS_RS00965 0.70 -1.7 217,509 + RS_RS00965 0.72 -1.7 217,510 - RS_RS00965 0.72 +1.1 217,649 + RS_RS00965 0.80 +1.1 217,649 + RS_RS00965 0.80 -0.5 217,650 - RS_RS00965 0.80 -0.3 217,650 - RS_RS00965 0.80 -2.0 217,691 + RS_RS00965 0.82 -0.0 217,713 - RS_RS00965 0.83 +1.2 217,756 + RS_RS00965 0.86 -1.9 217,756 + RS_RS00965 0.86 -0.1 217,757 - RS_RS00965 0.86 -0.4 217,760 + RS_RS00965 0.86 -0.1 217,761 - RS_RS00965 0.86 -0.8 218,004 + +0.6 218,123 - +0.1 218,123 - -0.5 218,123 - -0.2 218,127 - +2.1 218,164 + -0.0 218,243 + -0.0 218,244 - -0.6 218,252 - +1.4 218,401 + -0.2 218,401 + +2.2 218,401 + -0.0 218,402 - +1.0 218,402 - +0.6 218,402 - +0.5 218,402 - +0.8 218,402 - -1.0 218,402 - -0.9 218,527 - RS_RS00970 0.14 -1.6 218,527 - RS_RS00970 0.14 -0.4 218,541 + RS_RS00970 0.15 +2.6 218,542 - RS_RS00970 0.15 -0.7 218,542 - RS_RS00970 0.15 -1.2 218,712 + RS_RS00970 0.28 +1.3 218,712 + RS_RS00970 0.28 +1.6 218,712 + RS_RS00970 0.28 +1.6 218,713 - RS_RS00970 0.28 +1.5 218,713 - RS_RS00970 0.28 +0.1 218,713 - RS_RS00970 0.28 -0.1 218,799 + RS_RS00970 0.34 -1.4 218,799 + RS_RS00970 0.34 -0.4 218,799 + RS_RS00970 0.34 -1.6 218,959 - RS_RS00970 0.46 +0.2 218,982 + RS_RS00970 0.48 -1.0 218,982 + RS_RS00970 0.48 +1.6 218,983 - RS_RS00970 0.48 -0.8 218,983 - RS_RS00970 0.48 -1.7
Or see this region's nucleotide sequence