Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36955 and RR42_RS36960 are separated by 103 nucleotides
RR42_RS36955: RR42_RS36955 - multidrug transporter, at 3,745,400 to 3,746,737
_RS36955
RR42_RS36960: RR42_RS36960 - hypothetical protein, at 3,746,841 to 3,748,142
_RS36960
Position (kb)
3745
3746
3747 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3744.669 kb on + strand at 3744.699 kb on + strand at 3744.699 kb on + strand at 3744.699 kb on + strand at 3744.699 kb on + strand at 3744.700 kb on - strand at 3744.700 kb on - strand at 3744.716 kb on + strand at 3744.728 kb on + strand at 3744.729 kb on - strand at 3744.729 kb on - strand at 3744.969 kb on + strand at 3744.970 kb on - strand at 3744.970 kb on - strand at 3745.050 kb on - strand at 3745.050 kb on - strand at 3745.059 kb on + strand at 3745.139 kb on + strand at 3745.162 kb on + strand at 3745.289 kb on + strand at 3745.538 kb on + strand, within RR42_RS36955 at 3745.741 kb on + strand, within RR42_RS36955 at 3745.800 kb on - strand, within RR42_RS36955 at 3745.871 kb on + strand, within RR42_RS36955 at 3745.871 kb on + strand, within RR42_RS36955 at 3745.950 kb on + strand, within RR42_RS36955 at 3745.950 kb on + strand, within RR42_RS36955 at 3745.951 kb on - strand, within RR42_RS36955 at 3746.019 kb on - strand, within RR42_RS36955 at 3746.235 kb on - strand, within RR42_RS36955 at 3746.235 kb on - strand, within RR42_RS36955 at 3746.302 kb on + strand, within RR42_RS36955 at 3746.303 kb on - strand, within RR42_RS36955 at 3746.303 kb on - strand, within RR42_RS36955 at 3746.313 kb on - strand, within RR42_RS36955 at 3746.389 kb on + strand, within RR42_RS36955 at 3746.390 kb on - strand, within RR42_RS36955 at 3746.555 kb on + strand, within RR42_RS36955 at 3746.555 kb on + strand, within RR42_RS36955 at 3746.594 kb on + strand, within RR42_RS36955 at 3747.076 kb on - strand, within RR42_RS36960 at 3747.180 kb on + strand, within RR42_RS36960 at 3747.181 kb on - strand, within RR42_RS36960 at 3747.207 kb on + strand, within RR42_RS36960 at 3747.351 kb on + strand, within RR42_RS36960 at 3747.351 kb on + strand, within RR42_RS36960 at 3747.525 kb on + strand, within RR42_RS36960 at 3747.703 kb on + strand, within RR42_RS36960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,744,669 + -1.4 3,744,699 + -0.6 3,744,699 + -0.1 3,744,699 + -1.1 3,744,699 + +1.0 3,744,700 - +1.0 3,744,700 - +0.4 3,744,716 + +0.3 3,744,728 + -0.6 3,744,729 - -0.3 3,744,729 - +0.8 3,744,969 + -0.1 3,744,970 - -0.4 3,744,970 - -0.1 3,745,050 - -0.8 3,745,050 - +0.0 3,745,059 + -1.2 3,745,139 + -0.7 3,745,162 + +0.7 3,745,289 + +0.3 3,745,538 + RR42_RS36955 0.10 -1.0 3,745,741 + RR42_RS36955 0.25 -3.6 3,745,800 - RR42_RS36955 0.30 -2.8 3,745,871 + RR42_RS36955 0.35 -3.4 3,745,871 + RR42_RS36955 0.35 -0.4 3,745,950 + RR42_RS36955 0.41 +0.3 3,745,950 + RR42_RS36955 0.41 +1.1 3,745,951 - RR42_RS36955 0.41 +0.3 3,746,019 - RR42_RS36955 0.46 -0.9 3,746,235 - RR42_RS36955 0.62 -1.7 3,746,235 - RR42_RS36955 0.62 +0.0 3,746,302 + RR42_RS36955 0.67 -0.3 3,746,303 - RR42_RS36955 0.67 -0.8 3,746,303 - RR42_RS36955 0.67 -2.4 3,746,313 - RR42_RS36955 0.68 +0.8 3,746,389 + RR42_RS36955 0.74 -0.3 3,746,390 - RR42_RS36955 0.74 -0.3 3,746,555 + RR42_RS36955 0.86 +0.3 3,746,555 + RR42_RS36955 0.86 +0.7 3,746,594 + RR42_RS36955 0.89 -0.4 3,747,076 - RR42_RS36960 0.18 -0.3 3,747,180 + RR42_RS36960 0.26 -0.7 3,747,181 - RR42_RS36960 0.26 -0.8 3,747,207 + RR42_RS36960 0.28 -0.3 3,747,351 + RR42_RS36960 0.39 -0.9 3,747,351 + RR42_RS36960 0.39 +0.6 3,747,525 + RR42_RS36960 0.53 -0.4 3,747,703 + RR42_RS36960 0.66 -0.7
Or see this region's nucleotide sequence