Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32650
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,720,589 | + | +0.7 | |||
2,721,265 | + | RR42_RS32645 | 0.85 | +0.7 | |
2,721,271 | - | RR42_RS32645 | 0.85 | -1.4 | |
2,721,371 | - | +0.1 | |||
2,721,428 | + | -1.3 | |||
2,721,428 | + | -1.8 | |||
2,721,663 | + | RR42_RS32650 | 0.18 | -0.8 | |
2,721,830 | + | RR42_RS32650 | 0.30 | +0.7 | |
2,721,972 | - | RR42_RS32650 | 0.40 | +0.6 | |
2,721,972 | - | RR42_RS32650 | 0.40 | -0.7 | |
2,722,111 | + | RR42_RS32650 | 0.49 | +0.9 | |
2,722,149 | + | RR42_RS32650 | 0.52 | -0.4 | |
2,722,244 | + | RR42_RS32650 | 0.58 | -0.2 | |
2,722,440 | - | RR42_RS32650 | 0.72 | +0.3 | |
2,722,440 | - | RR42_RS32650 | 0.72 | +0.3 | |
2,722,648 | + | RR42_RS32650 | 0.86 | -0.0 | |
2,722,648 | + | RR42_RS32650 | 0.86 | -0.4 | |
2,723,002 | + | -1.8 | |||
2,723,003 | - | -0.2 | |||
2,723,153 | + | RR42_RS32655 | 0.17 | -0.2 | |
2,723,172 | + | RR42_RS32655 | 0.19 | +1.2 | |
2,723,723 | + | RR42_RS32655 | 0.78 | -0.2 | |
2,723,724 | - | RR42_RS32655 | 0.78 | +0.2 | |
2,723,796 | - | RR42_RS32655 | 0.86 | +1.1 |
Or see this region's nucleotide sequence