Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26085
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,200,465 | - | RR42_RS26075 | 0.88 | +0.5 | |
1,200,573 | + | +0.7 | |||
1,200,573 | + | -0.0 | |||
1,200,967 | + | RR42_RS26080 | 0.38 | -0.7 | |
1,201,372 | + | +0.5 | |||
1,201,372 | + | -1.0 | |||
1,201,372 | + | -2.0 | |||
1,201,373 | - | -0.1 | |||
1,201,373 | - | -0.3 | |||
1,201,398 | - | -0.0 | |||
1,201,398 | - | -0.7 | |||
1,201,398 | - | +1.2 | |||
1,201,513 | - | +0.5 | |||
1,201,694 | - | RR42_RS26085 | 0.34 | -0.4 | |
1,201,726 | - | RR42_RS26085 | 0.38 | +0.9 | |
1,201,726 | - | RR42_RS26085 | 0.38 | +0.4 | |
1,202,025 | + | RR42_RS26085 | 0.78 | +1.1 | |
1,202,168 | + | +1.3 | |||
1,202,169 | - | -0.5 | |||
1,202,583 | + | RR42_RS26090 | 0.29 | -0.3 | |
1,202,584 | - | RR42_RS26090 | 0.29 | +1.5 | |
1,202,584 | - | RR42_RS26090 | 0.29 | -0.1 | |
1,202,914 | - | RR42_RS26090 | 0.57 | +0.4 | |
1,202,952 | + | RR42_RS26090 | 0.61 | +0.7 | |
1,202,952 | + | RR42_RS26090 | 0.61 | +0.3 |
Or see this region's nucleotide sequence