Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25265
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,007,645 | + | +1.4 | |||
1,007,645 | + | +0.2 | |||
1,007,645 | + | -0.5 | |||
1,007,646 | - | +0.1 | |||
1,007,726 | + | -0.1 | |||
1,007,801 | - | +0.1 | |||
1,007,951 | + | +0.2 | |||
1,008,122 | - | -0.8 | |||
1,008,951 | + | -0.4 | |||
1,009,470 | - | RR42_RS25270 | 0.34 | +0.2 | |
1,009,523 | + | RR42_RS25270 | 0.38 | +0.2 | |
1,009,524 | - | RR42_RS25270 | 0.38 | +0.7 | |
1,009,524 | - | RR42_RS25270 | 0.38 | -0.7 | |
1,009,524 | - | RR42_RS25270 | 0.38 | +0.5 | |
1,009,524 | - | RR42_RS25270 | 0.38 | +0.3 | |
1,009,524 | - | RR42_RS25270 | 0.38 | +1.0 | |
1,009,589 | + | RR42_RS25270 | 0.43 | +0.6 | |
1,009,590 | - | RR42_RS25270 | 0.43 | -0.9 | |
1,009,590 | - | RR42_RS25270 | 0.43 | -2.3 | |
1,009,793 | + | RR42_RS25270 | 0.58 | +0.2 | |
1,009,793 | + | RR42_RS25270 | 0.58 | +0.5 | |
1,009,793 | + | RR42_RS25270 | 0.58 | -0.2 | |
1,009,817 | + | RR42_RS25270 | 0.60 | -1.2 |
Or see this region's nucleotide sequence