Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24945 and RR42_RS24950 are separated by 142 nucleotides RR42_RS24950 and RR42_RS24955 are separated by 245 nucleotides
RR42_RS24945: RR42_RS24945 - hypothetical protein, at 934,214 to 935,179
_RS24945
RR42_RS24950: RR42_RS24950 - TetR family transcriptional regulator, at 935,322 to 935,921
_RS24950
RR42_RS24955: RR42_RS24955 - LysR family transcriptional regulator, at 936,167 to 937,069
_RS24955
Position (kb) 935
936 Strain fitness (log2 ratio) -2
-1
0
1 at 934.474 kb on + strand, within RR42_RS24945 at 934.474 kb on + strand, within RR42_RS24945 at 934.475 kb on - strand, within RR42_RS24945 at 934.532 kb on + strand, within RR42_RS24945 at 934.726 kb on + strand, within RR42_RS24945 at 934.726 kb on + strand, within RR42_RS24945 at 934.726 kb on + strand, within RR42_RS24945 at 934.757 kb on + strand, within RR42_RS24945 at 934.757 kb on + strand, within RR42_RS24945 at 934.757 kb on + strand, within RR42_RS24945 at 934.758 kb on - strand, within RR42_RS24945 at 934.758 kb on - strand, within RR42_RS24945 at 934.758 kb on - strand, within RR42_RS24945 at 934.846 kb on - strand, within RR42_RS24945 at 935.341 kb on - strand at 935.341 kb on - strand at 935.597 kb on - strand, within RR42_RS24950 at 935.771 kb on - strand, within RR42_RS24950 at 935.773 kb on + strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.834 kb on - strand, within RR42_RS24950 at 935.927 kb on - strand at 935.927 kb on - strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.982 kb on + strand at 936.137 kb on + strand at 936.138 kb on - strand at 936.425 kb on + strand, within RR42_RS24955 at 936.426 kb on - strand, within RR42_RS24955 at 936.426 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.670 kb on - strand, within RR42_RS24955 at 936.670 kb on - strand, within RR42_RS24955 at 936.738 kb on - strand, within RR42_RS24955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 934,474 + RR42_RS24945 0.27 -0.2 934,474 + RR42_RS24945 0.27 +0.8 934,475 - RR42_RS24945 0.27 +0.2 934,532 + RR42_RS24945 0.33 -1.1 934,726 + RR42_RS24945 0.53 +0.6 934,726 + RR42_RS24945 0.53 -0.7 934,726 + RR42_RS24945 0.53 +0.9 934,757 + RR42_RS24945 0.56 -1.4 934,757 + RR42_RS24945 0.56 +0.8 934,757 + RR42_RS24945 0.56 +0.3 934,758 - RR42_RS24945 0.56 -0.6 934,758 - RR42_RS24945 0.56 +0.7 934,758 - RR42_RS24945 0.56 -1.0 934,846 - RR42_RS24945 0.65 +0.3 935,341 - -0.0 935,341 - +0.1 935,597 - RR42_RS24950 0.46 -0.1 935,771 - RR42_RS24950 0.75 -0.9 935,773 + RR42_RS24950 0.75 -0.7 935,774 - RR42_RS24950 0.75 -0.9 935,774 - RR42_RS24950 0.75 -2.2 935,774 - RR42_RS24950 0.75 +0.3 935,834 - RR42_RS24950 0.85 -0.3 935,927 - -0.1 935,927 - +0.7 935,966 + -1.4 935,966 + -0.3 935,966 + +0.5 935,966 + +0.6 935,982 + -0.2 936,137 + +0.6 936,138 - -0.7 936,425 + RR42_RS24955 0.29 -0.1 936,426 - RR42_RS24955 0.29 -0.7 936,426 - RR42_RS24955 0.29 -0.0 936,510 - RR42_RS24955 0.38 -1.8 936,510 - RR42_RS24955 0.38 +0.8 936,510 - RR42_RS24955 0.38 +0.4 936,510 - RR42_RS24955 0.38 -0.1 936,670 - RR42_RS24955 0.56 -0.4 936,670 - RR42_RS24955 0.56 +1.2 936,738 - RR42_RS24955 0.63 +1.5
Or see this region's nucleotide sequence