Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24650 and RR42_RS24655 are separated by 64 nucleotides RR42_RS24655 and RR42_RS24660 are separated by 214 nucleotides RR42_RS24660 and RR42_RS24665 overlap by 4 nucleotides
RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796
_RS24650
RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562
_RS24655
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
Position (kb) 868
869
870
871
872 Strain fitness (log2 ratio) -1
0
1
2 at 867.811 kb on + strand at 867.812 kb on - strand at 867.824 kb on - strand at 867.979 kb on - strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.039 kb on - strand, within RR42_RS24655 at 868.044 kb on + strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.131 kb on - strand, within RR42_RS24655 at 868.267 kb on - strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.286 kb on - strand, within RR42_RS24655 at 868.427 kb on + strand, within RR42_RS24655 at 868.428 kb on - strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.524 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.569 kb on + strand at 868.594 kb on - strand at 868.604 kb on + strand at 869.038 kb on + strand at 869.038 kb on + strand at 869.039 kb on - strand at 869.300 kb on + strand, within RR42_RS24660 at 869.300 kb on + strand, within RR42_RS24660 at 869.301 kb on - strand, within RR42_RS24660 at 869.364 kb on - strand, within RR42_RS24660 at 869.436 kb on + strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.563 kb on + strand, within RR42_RS24660 at 869.564 kb on - strand, within RR42_RS24660 at 869.877 kb on - strand, within RR42_RS24660 at 870.020 kb on + strand, within RR42_RS24660 at 870.020 kb on + strand, within RR42_RS24660 at 870.089 kb on + strand, within RR42_RS24660 at 870.089 kb on + strand, within RR42_RS24660 at 870.213 kb on - strand, within RR42_RS24660 at 870.213 kb on - strand, within RR42_RS24660 at 870.280 kb on - strand, within RR42_RS24660 at 870.357 kb on - strand, within RR42_RS24660 at 870.414 kb on - strand, within RR42_RS24660 at 870.417 kb on - strand, within RR42_RS24660 at 870.417 kb on - strand, within RR42_RS24660 at 870.501 kb on - strand, within RR42_RS24660 at 870.679 kb on + strand, within RR42_RS24660 at 870.680 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 871.049 kb on + strand, within RR42_RS24660 at 871.049 kb on + strand, within RR42_RS24660 at 871.050 kb on - strand, within RR42_RS24660 at 871.091 kb on - strand, within RR42_RS24660 at 871.252 kb on + strand, within RR42_RS24660 at 871.253 kb on - strand, within RR42_RS24660 at 871.331 kb on + strand, within RR42_RS24660 at 871.334 kb on + strand, within RR42_RS24660 at 871.375 kb on + strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.391 kb on + strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.697 kb on - strand at 871.795 kb on + strand at 871.854 kb on + strand at 871.904 kb on + strand at 871.905 kb on - strand at 872.088 kb on + strand, within RR42_RS24665 at 872.099 kb on + strand, within RR42_RS24665
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 867,811 + -0.5 867,812 - +0.2 867,824 - +1.1 867,979 - RR42_RS24655 0.17 +0.8 868,038 + RR42_RS24655 0.25 +0.5 868,038 + RR42_RS24655 0.25 -1.6 868,039 - RR42_RS24655 0.25 +1.9 868,044 + RR42_RS24655 0.26 -0.0 868,045 - RR42_RS24655 0.26 +0.2 868,045 - RR42_RS24655 0.26 +0.2 868,131 - RR42_RS24655 0.38 +0.4 868,267 - RR42_RS24655 0.58 +0.4 868,285 + RR42_RS24655 0.60 +0.5 868,285 + RR42_RS24655 0.60 +0.7 868,285 + RR42_RS24655 0.60 -0.5 868,286 - RR42_RS24655 0.61 +0.3 868,427 + RR42_RS24655 0.81 +0.2 868,428 - RR42_RS24655 0.81 +0.7 868,429 + RR42_RS24655 0.81 -0.4 868,429 + RR42_RS24655 0.81 -0.3 868,429 + RR42_RS24655 0.81 -0.8 868,429 + RR42_RS24655 0.81 -0.3 868,430 - RR42_RS24655 0.81 +0.3 868,430 - RR42_RS24655 0.81 +0.1 868,430 - RR42_RS24655 0.81 +0.4 868,524 + -0.7 868,525 + +0.2 868,525 + -0.0 868,525 + +0.7 868,525 + -0.2 868,526 - -1.6 868,526 - -0.6 868,526 - -0.3 868,526 - +0.4 868,548 - +0.7 868,548 - +0.6 868,548 - +0.6 868,569 + -0.0 868,594 - +0.3 868,604 + +0.2 869,038 + -0.6 869,038 + -1.4 869,039 - -0.5 869,300 + RR42_RS24660 0.17 -0.2 869,300 + RR42_RS24660 0.17 -0.6 869,301 - RR42_RS24660 0.17 +0.7 869,364 - RR42_RS24660 0.19 -0.9 869,436 + RR42_RS24660 0.21 +0.5 869,437 - RR42_RS24660 0.21 +1.0 869,437 - RR42_RS24660 0.21 +0.2 869,460 + RR42_RS24660 0.22 +0.2 869,460 + RR42_RS24660 0.22 -0.1 869,563 + RR42_RS24660 0.25 +0.7 869,564 - RR42_RS24660 0.25 +0.2 869,877 - RR42_RS24660 0.35 +0.7 870,020 + RR42_RS24660 0.40 +0.2 870,020 + RR42_RS24660 0.40 +0.8 870,089 + RR42_RS24660 0.42 -0.2 870,089 + RR42_RS24660 0.42 +0.2 870,213 - RR42_RS24660 0.46 -0.6 870,213 - RR42_RS24660 0.46 -0.5 870,280 - RR42_RS24660 0.48 -0.8 870,357 - RR42_RS24660 0.51 -0.8 870,414 - RR42_RS24660 0.53 +0.2 870,417 - RR42_RS24660 0.53 -0.0 870,417 - RR42_RS24660 0.53 +0.5 870,501 - RR42_RS24660 0.55 +0.1 870,679 + RR42_RS24660 0.61 +0.4 870,680 - RR42_RS24660 0.61 +0.3 870,721 - RR42_RS24660 0.63 +0.2 870,721 - RR42_RS24660 0.63 +0.5 870,721 - RR42_RS24660 0.63 +0.8 870,721 - RR42_RS24660 0.63 +0.4 871,049 + RR42_RS24660 0.73 +0.1 871,049 + RR42_RS24660 0.73 +1.2 871,050 - RR42_RS24660 0.73 +0.6 871,091 - RR42_RS24660 0.74 -0.5 871,252 + RR42_RS24660 0.80 +0.3 871,253 - RR42_RS24660 0.80 +0.5 871,331 + RR42_RS24660 0.82 -0.4 871,334 + RR42_RS24660 0.82 +0.6 871,375 + RR42_RS24660 0.84 +0.2 871,376 - RR42_RS24660 0.84 -1.4 871,376 - RR42_RS24660 0.84 +0.8 871,391 + RR42_RS24660 0.84 -0.1 871,392 - RR42_RS24660 0.84 -0.5 871,392 - RR42_RS24660 0.84 +0.8 871,392 - RR42_RS24660 0.84 +0.1 871,697 - -1.0 871,795 + -0.9 871,854 + +0.3 871,904 + -1.2 871,905 - -1.7 872,088 + RR42_RS24665 0.19 -0.1 872,099 + RR42_RS24665 0.20 -0.1
Or see this region's nucleotide sequence